6
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10
replies
3.9k
views
Which input file is used for DGEList in EgdeR?
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updated 17 months ago by • 0 • written 2.6 years ago by ▴ 10
0
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1.0k
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write.FCS() produces files which cannot be opened by CytExpert software
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2.6 years ago pawel.malecki • 0
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0
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1.5k
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WGCNA Heatmap and Export to Cytoscape Not Working
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2.6 years ago gianni.drm • 0
0
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need help with methylation locus identification and YAMA
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2.6 years ago Poonam • 0
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1.6k
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WGCNA soft thresholding suggesting a power of 1
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0
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0
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How to use MeDIPS with BEDPE format input?
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2.6 years ago Luomeng • 0
1
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1
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1.2k
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Library sizes of miRNA sequencing data and TMM normalization with Edge-R
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2
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735
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EdgeR model matrix
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Create an Annotation DB file for a non-model organism
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updated 2.6 years ago by 68k • written 2.6 years ago by ▴ 50
0
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0
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796
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2.6 years ago christine.wegler • 0
0
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2
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0
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1
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1.4k
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Subread installation on Linux ARM64
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1
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updated 2.6 years ago by 25k • written 2.6 years ago by • 0
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1
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1.2k
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struggling to create a heatmap
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1
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3
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updated 24 months ago by 43k • written 2.6 years ago by • 0
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2
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2.6 years ago Elif • 0
0
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2
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Which genes are outliers in DESeq2?
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updated 2.6 years ago by ★ 4.9k • written 2.6 years ago by • 0
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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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3
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3.0k
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log2 of normalized counts for further analyzes
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updated 2.6 years ago by 68k • written 2.6 years ago by ▴ 10
2
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9
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updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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0
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Convert SpatialExperiment Object to Seurat Object
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2.6 years ago cathalgking ▴ 10
1
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1
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BiocGenerics package: 404 error during R shiny app deployment
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updated 2.5 years ago by ▴ 10 • written 2.6 years ago by ▴ 10
3
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3
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Is ther an annotation package for sheep (Ovis aries)
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updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 10
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2
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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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2.6 years ago Ben J ▴ 20
0
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1
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1.1k
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multiGSEA package in R not appropriately assigning metabolites to pathways?
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2.7 years ago • updated 2.6 years ago Thomas • 0
0
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914
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4
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5
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0
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1
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1.1k
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input for singR function
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4
votes
2
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TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
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2.6 years ago Tobias ▴ 40
0
votes
0
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2
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Micro Array GEO data analysis
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updated 2.6 years ago by 68k • written 2.6 years ago by • 0
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15
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AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
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2.6 years ago • updated 2.5 years ago Mistinrain ▴ 10
16
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10
replies
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Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
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updated 2.6 years ago by 16k • written 3.9 years ago by ▴ 20
0
votes
1
reply
954
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msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
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updated 2.6 years ago by • 0 • written 2.9 years ago by ▴ 10
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0
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model overfitting using OPLS DA for metabolomics analysis
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updated 2.6 years ago by 4.2k • written 2.6 years ago by • 0
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2
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2.6 years ago BioEpi • 0
0
votes
1
reply
958
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DESeq2 with 2 continuous factors, LRT, coeficients and slope
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updated 2.6 years ago by 43k • written 2.6 years ago by ▴ 10
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reply
585
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
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written 2.8 years ago by 4.2k
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votes
0
replies
713
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Numbers of Signaling Pathways?
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2.6 years ago beikrystal25 • 0
0
votes
1
reply
986
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Cibersort phenotype file
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updated 17 months ago by • 0 • written 2.6 years ago by • 0
1
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3
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Limma-voom with inverse probability weights (similar to sample weights)
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updated 2.6 years ago by 53k • written 2.6 years ago by ▴ 10
0
votes
1
reply
873
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AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
AnnotationForge
updated 2.6 years ago by • 0 • written 2.6 years ago by ▴ 10
0
votes
1
reply
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DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the library type when I using DESeq() function if I already using featur…
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updated 2.6 years ago by ★ 1.4k • written 2.6 years ago by • 0
0
votes
0
replies
760
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rtracklayer ignores ranges argument
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2.6 years ago Kyle • 0
0
votes
0
replies
906
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Changing pathway names in pathway analysis
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2.6 years ago Katharina • 0
1
vote
2
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1.1k
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How to map geneIds to ENTREZIDs
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2.6 years ago stacy.genovese • 0
0
votes
0
replies
878
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Analyze Amplicon Seq results for variants and mutation sites
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2.6 years ago Sara • 0
1
vote
1
reply
4.7k
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batch effect correction before DESeq2 analysis
DESeq2 BatchEffect
updated 2.6 years ago by ★ 4.9k • written 2.6 years ago by ▴ 50
46,633 results • Page 62 of 933
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Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexecutor4 • 0
FFH4X is a [Free Fire mod][1] menu APK that offers cheats like auto headshot, aimbot, ESP, wallhack, and unlimited skins. Players use it to…
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Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Comment: GO.db and others package Download failure by Skyler • 0
Am I using Bioc-devel?
Comment: GO.db and others package Download failure by James W. MacDonald 68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
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Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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