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Votes
0
votes
0
replies
694
views
need help with methylation locus identification and YAMA
segmentSeq
2.9 years ago
Poonam
• 0
0
votes
1
reply
1.7k
views
WGCNA soft thresholding suggesting a power of 1
independence
thresholding
WGCNA
connectivity
scale
updated 21 months ago by
boczniak767
▴ 740 • written 2.9 years ago by
Kim
• 0
0
votes
0
replies
935
views
How to use MeDIPS with BEDPE format input?
R
medip-seq
MEDIPS
2.9 years ago
Luomeng
• 0
0
votes
0
replies
995
views
Problem with "too large halfWindowSize" with writeMSdata after centroiding MSe data
MSnbase
2.9 years ago
christine.wegler
• 0
0
votes
1
reply
1.2k
views
Samtools markdup in Rsamtools
Rsamtools
updated 2.9 years ago by
Martin Morgan
25k • written 2.9 years ago by
Learner
• 0
0
votes
2
replies
3.0k
views
stat_compare_means function - Error 'must have same length'
microbiomeDataSets
Microbiome
2.9 years ago
Elif
• 0
1
vote
0
replies
2.9k
views
Convert SpatialExperiment Object to Seurat Object
scuttle
scater
seurat
SpatialExperiment
2.9 years ago
cathalgking
▴ 10
1
vote
1
reply
1.1k
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics
ddCt
updated 2.7 years ago by
dr
▴ 10 • written 2.9 years ago by
Arielle
▴ 10
2
votes
2
replies
1.9k
views
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
DEXSeq
2.9 years ago
Ben J
▴ 20
0
votes
2
replies
971
views
Categorical or continuous covariates
ALL
The
DifferentialRegulation
PathNet
written 2.9 years ago by
Mine
• 0
4
votes
5
replies
1.6k
views
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
GenomicAlignments
2.9 years ago • updated 2.8 years ago
Robert Castelo
★ 3.4k
0
votes
1
reply
1.1k
views
input for singR function
Seurat_object
singe-cell
singleR
updated 10 months ago by
iamin053
• 0 • written 2.9 years ago by
Paria
• 0
0
votes
0
replies
854
views
rnbeads inference
epigenetics
RnBeads
2.9 years ago
Jitendra
▴ 10
0
votes
0
replies
994
views
model overfitting using OPLS DA for metabolomics analysis
OPLSDA
updated 2.9 years ago by
shepherl
4.2k • written 2.9 years ago by
kokebhaddis
• 0
0
votes
0
replies
756
views
Numbers of Signaling Pathways?
chemistry
2.9 years ago
beikrystal25
• 0
0
votes
1
reply
1.1k
views
Cibersort phenotype file
cibersort
deconvR
immune
updated 20 months ago by
ivorychan7777
• 0 • written 2.9 years ago by
609b0d25
• 0
0
votes
1
reply
946
views
AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
AnnotationForge
updated 2.9 years ago by
jeffbrick852
• 0 • written 2.9 years ago by
Mistinrain
▴ 10
0
votes
0
replies
827
views
rtracklayer ignores ranges argument
rtracklayer
2.9 years ago
Kyle
• 0
0
votes
0
replies
973
views
Changing pathway names in pathway analysis
pathways
Pathways
2.9 years ago
Katharina
• 0
0
votes
0
replies
927
views
Analyze Amplicon Seq results for variants and mutation sites
virus
pcr
amplican
mutations
2.9 years ago
Sara
• 0
0
votes
0
replies
566
views
customProDB: error aberrant fasta from SNV
customProDB
2.9 years ago
finoa.li
• 0
0
votes
1
reply
971
views
Bioconductor tool for curating annotations?
Annotation
updated 2.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.9 years ago by
Charles Plessy
▴ 180
1
vote
0
replies
697
views
Alternatives to perform peptide identification in Bioconductor version '3.16'?
peptide
peptideidentification
rTANDEM
MSGFplus
Alternatives
updated 2.9 years ago by
shepherl
4.2k • written 2.9 years ago by
vaddanki
▴ 10
0
votes
0
replies
691
views
Distance between columns vs distance between rows and SVD
distance
svd
2.9 years ago
Lenny186
• 0
0
votes
1
reply
1.3k
views
Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors
Aspli
updated 2.9 years ago by
Sophie
• 0 • written 2.9 years ago by
salvocomplicazioni1
• 0
0
votes
1
reply
870
views
In WGCNA which is the matrix on which the eigen decomposition is run to get the module eigen gene
WGCNA
updated 2.9 years ago by
andres.firrincieli
▴ 50 • written 2.9 years ago by
S
• 0
0
votes
0
replies
1.8k
views
GOplots::GOChord with heatmaps?
GOChord
ggplot2::geom_polygon()
GOplot
ggplot2
2.9 years ago
adrija.kalvisa
• 0
0
votes
0
replies
768
views
Rsubread align every slow in mac but faster in windows
Rsubread
2.9 years ago
Wei
• 0
0
votes
0
replies
648
views
msa module crash
msa
2.9 years ago
systems
• 0
0
votes
1
reply
2.9k
views
convert local downloaded bigwig files to .bed files
BRgen
BRGenomics
updated 2.9 years ago by
ATpoint
★ 5.0k • written 2.9 years ago by
kavator
▴ 30
4
votes
8
replies
4.5k
views
How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
updated 17 months ago by
callumjcparr
• 0 • written 2.9 years ago by
Bernardo
▴ 10
0
votes
0
replies
587
views
INSPEcT: How to get the RNA dynamics for steady-state with INSPEcT minus
INSPEcT
2.9 years ago
MK
• 0
0
votes
0
replies
1000
views
Does verboseScatterplot in WGCNA package allow for highlighting a subset of genes
WGCNA
2.9 years ago
S
• 0
0
votes
1
reply
1.1k
views
GRanges list convert into igraph format
GRanges
igraph
updated 2.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.9 years ago by
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
Error importing UCSC phastCons annotation in BigWig format
GenomicRanges
rtracklayer
2.9 years ago
Delta._.43
▴ 20
1
vote
1
reply
785
views
MSc student
genomes
updated 2.9 years ago by
Basti
▴ 780 • written 2.9 years ago by
Deeplaxmi
• 0
0
votes
8
replies
2.6k
views
DropletUtils::read10xCounts error
read10xCounts
DropletUtils
2.9 years ago
fdumetz
• 0
0
votes
3
replies
1.6k
views
Error when using "readTranscriptFeatures" in "Genomation" R package for loading the bed file
readTranscriptFeatures
R
genomation
bed
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
sat
• 0
0
votes
0
replies
980
views
adding peptides to a multiple sequence alignment
msa
IRanges
Biostrings
2.9 years ago
Mario Dejung
• 0
1
vote
0
replies
1.1k
views
Problem with VSN: Error in vsnML(sv) : L-BFGS-B needs finite values of 'fn'
justvsn
vsn
Normalization
vsn2
Proteomics
2.9 years ago
Arend
▴ 10
0
votes
1
reply
1.1k
views
Error in ATACseqQC bamQC analysis
ATACSeq
ATACseqQC
updated 2.9 years ago by
Ou, Jianhong
★ 1.3k • written 2.9 years ago by
tahir.msajid
• 0
0
votes
1
reply
1.4k
views
cell_count column in SpatialExperiment Object
scuttle
scater
SpatialExperiment
updated 2.9 years ago by
alan.ocallaghan
▴ 160 • written 2.9 years ago by
cathalgking
▴ 10
0
votes
2
replies
818
views
Time series between two conditions with a common time zero
timeseries
updated 2.9 years ago by
James W. MacDonald
68k • written 2.9 years ago by
Brynn
• 0
0
votes
0
replies
578
views
KEGGREST API keggLink and keggGet for hsa:5164
reactions
hsa:5164
3.0 years ago
susrinivasan
• 0
0
votes
8
replies
2.0k
views
Question about Diffbind counts
DiffBind
3.0 years ago • updated 2.9 years ago
slrpatty
• 0
0
votes
0
replies
1.4k
views
Trying to use a NanoString expression set with batch effects to do GSVA
GSVA
Normalization
BatchEffect
GSVAdata
NanoString
3.0 years ago
Zhijie
• 0
0
votes
1
reply
869
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs
SNPlocs
updated 3.0 years ago by
ATpoint
★ 5.0k • written 3.0 years ago by
Mario Saare
▴ 20
0
votes
0
replies
1.1k
views
Identify accepted columns in TxDb objects
TxDb
3.0 years ago • updated 2.9 years ago
Lluís Revilla Sancho
▴ 760
0
votes
2
replies
1.1k
views
Celfiles not reading in
Microarray
written 3.0 years ago by
Oluwaseun
• 0
0
votes
1
reply
1.0k
views
GSA type of input data
GSEA
GSA
vst
updated 3.0 years ago by
Michael Love
43k • written 3.0 years ago by
nhaus
▴ 70
1,000 results • Page
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Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. We will …
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