Showing : Bioinformatics • reset
3
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8
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1.8k
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Problem with readFast5Summary in IONiseR related to HDF5
ioniser bioinformatics minion
updated 6.6 years ago by ▴ 380 • written 7.1 years ago by • 0
1
vote
3
replies
2.1k
views
Gene Ontology and Gene Set Enrichment
rna-seq bioinformatics gene ontology gene set enrichment go
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by ▴ 10
2
votes
5
replies
1.5k
views
Differential Gene Expression
deseq2 bioinformatics rna-seq Tutorial
updated 7.6 years ago by 41k • written 7.6 years ago by ▴ 10
3
votes
6
replies
1.9k
views
Analyzing Open source PPI databases
ppi bioinformatics
updated 8.7 years ago by 25k • written 8.7 years ago by ▴ 10
0
votes
2
replies
3.1k
views
AffyMetrix CEL file; data is already transformed too log2
affy microarray bioinformatics
9.2 years ago kanacska ▴ 10
0
votes
2
replies
2.4k
views
Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 8.8 years ago by ▴ 170
3
votes
7
replies
2.5k
views
How to convert bia file to tsv file
samtools bioinformatics
8.9 years ago engr.yahya602 • 0
3
votes
6
replies
1.9k
views
Regressing effect of treatment on RNA-seq expected count from rsem.
RNA rna-seq science bioinformatics
updated 7.0 years ago by 65k • written 7.0 years ago by ▴ 20
0
votes
1
reply
1.6k
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In DESeq2, why LRT result's LFC doesn't match with any of Wald test result's LFC?
deseq2 bioinformatics
updated 7.5 years ago by 41k • written 7.5 years ago by • 0
1
vote
2
replies
2.2k
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Job: Postdoctoral Research Fellow in Bioinformatics – Systems Biology of Childhood Cancer
bioinformatics systemsbiology cancer job austria Job
8.8 years ago • updated 8.7 years ago heinrich.kovar ▴ 10
1
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2
replies
2.5k
views
topGO for Gene Ontology and Gene Set enrichment
topgo gene ontology gene set enrichment rna-seq bioinformatics
updated 7.3 years ago by ▴ 730 • written 7.6 years ago by ▴ 10
4
votes
2
replies
1.2k
views
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
bioinformatics paper multiple treatments biologicalreplicates
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 80
1
vote
1
reply
5.5k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz clustering bioinformatics proteomics timecourse
updated 8.2 years ago by 1.6k • written 8.2 years ago by • 0
1
vote
1
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1.7k
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News: New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology bioinformatics teaching master News
updated 7.8 years ago by • 0 • written 7.9 years ago by ▴ 10
1
vote
2
replies
1.4k
views
How do i perform chi square test in r?
microarray chisquare bioconductor bioinformatics
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 10
0
votes
2
replies
739
views
abs() error in rstudio
Bioconductor BiocManager abs() Bioinformatics
written 17 months ago by • 0
1
vote
2
replies
950
views
Results Goana after edgeR pipeline
EdgeR Bioinformatics Goana
2.7 years ago Barista • 0
1
vote
5
replies
3.2k
views
How to convert a bam file into tsv file format?
bioinformatics
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
1
vote
2
replies
1.3k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
2.7 years ago Barista • 0
2
votes
2
replies
1.2k
views
How to deal with Expression set assembly problem?
deconvolution r scRNAseq bioinformatics
2.2 years ago Hasan Alanya • 0
2
votes
2
replies
966
views
Help for Research Proposal
drug development pathways bioinformatics
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
1
reply
1.2k
views
News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 7.3 years ago by • 0 • written 7.4 years ago by • 0
1
vote
6
replies
2.7k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 41k • written 5.4 years ago by • 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
2
replies
2.5k
views
Error in CummeRbund installation
cummerbund rnaseq bioinformatics bioconductor R
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
0
votes
1
reply
1.2k
views
surrogate variable analysis using R package "sva"
sva r bioinformatics
updated 7.6 years ago by ▴ 760 • written 7.6 years ago by ▴ 10
3
votes
4
replies
975
views
edgeR analysis of cells treated with either drug1, drug2, or a time matched control at two different time points, did I set this up correctly?
edger rnaseq gene expression bioinformatics
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
0
votes
2
replies
5.1k
views
Converting Fastq to Fasta in R
R Bioinformatics Fastq Fasta
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
1
vote
1
reply
1.2k
views
FPKM normalization questions!
r fpkm bioinformatics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by ▴ 10
0
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0
replies
1.4k
views
Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
8.0 years ago david.lynn • 0
0
votes
0
replies
1.6k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.2 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
2.2k
views
Job: PhD Positions in Helsinki
bioinformatics job Helsinki Finland Job
8.2 years ago Simon Anders ★ 3.7k
0
votes
0
replies
2.4k
views
Job: Full position as Bioinformatician at ETH Zurich in Personalized Medicine Data Fusion and Method Implementation
bioinformatics personalized medicine genomics Job
9.5 years ago Daniel Stekhoven ▴ 10
0
votes
3
replies
1.5k
views
How to extract / pull out each row(a.k.a, single genome interval ) from given bed files by row by row for meta analysis?
r bioinformatics peakset
updated 12 months ago by • 0 • written 8.3 years ago by ▴ 80
0
votes
0
replies
2.0k
views
Job: Postdocs and PhD students in the areas of Bioinformatics, Biostatistics or Medical Informatics
jobs job bioinformatics R Job
8.4 years ago Frank Kramer ▴ 60
1
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0
replies
1.7k
views
Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
0
votes
0
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1.4k
views
Job: Data Scientist, Mount Sinai School of Medicine, New York, NY USA
job postdoctoral fellow computational biology bioinformatics new york Job
7.4 years ago supindab ▴ 10
0
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1
reply
1.6k
views
Job: Bioinformatics Post-Doc Positions
cancer BIOINFORMATICS genomics RNAseq miRseq Job
9.2 years ago aaron • 0
0
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0
replies
1.5k
views
Job: Faculty Position in Computational Systems Biology at UC Riverside
systemsbiology bioinformatics position Job
9.6 years ago Thomas Girke ★ 1.7k
0
votes
0
replies
2.1k
views
Job: Bioinformatician - The Ragon Institute of MGH, MIT and Harvard
bioinformatician job bioinformatics immunology HIV Job
7.4 years ago • updated 7.1 years ago Ragon Institute of MGH, MIT and Harvard • 0
1
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0
replies
1.6k
views
Job: Job Opening: Computational Biologists in Cambridge, MA and NYC
ngs computational biology R genomics bioinformatics Job
8.5 years ago mmartin ▴ 20
1
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0
replies
1.2k
views
Job: Bioinformatician/Bioinformatics position, IMB Mainz, Germany
bioinformatics germany job Job
7.5 years ago sergisayolspuig ▴ 80
0
votes
0
replies
1.0k
views
Job: Job: Senior Scientist, Oncology Translational Research Johnson and Johnson
cancer jobs computational biology bioinformatics Job
5.9 years ago Michael Gormley ▴ 60
0
votes
0
replies
1.7k
views
Job: PhD Studentship: Genome-scale analysis of host-pathogen interactions
rnaseq single cell bioinformatics R epigenomics Job
8.5 years ago Garry Myers • 0
1
vote
0
replies
1.0k
views
Job: Chief Data Scientist
bioinformatics Job
7.5 years ago kaufmanm ▴ 10
0
votes
0
replies
1.2k
views
Job: PhD Position in Bioinformatics
bioinformatics protein variantannotation data integration Job
7.5 years ago stephan.pabinger • 0
0
votes
0
replies
1.4k
views
Job: Postdoc Positions in Computational Biology, Helmholtz Centre for Infection Research, Braunschweig, Germany
job bioinformatics computational biology post-doc postdoc Job
7.5 years ago cristina della beffa ▴ 30
0
votes
0
replies
1.6k
views
Job: Multiple postdoctoral fellowships are available immediately in the Gehlenborg Lab in the Department of Biomedical Informatics at Harvard Medical Scho…
bioinformatics bioinformatician job data visualization Job
8.5 years ago Doe, Aimee ▴ 40
1
vote
0
replies
1.3k
views
Job: FIMM-EMBL International PhD program now accepting applications
bioinformatics molecular medicine PhD Job
7.3 years ago gretchen.repasky ▴ 20
0
votes
0
replies
1.8k
views
Job: Harvard Medical School - Research Fellow Position at the Department of Biomedical Informatics
bioinformatician job bioinformatics bioinformatics scientist bioinformatician postdoc Job
8.6 years ago Doe, Aimee ▴ 40
50 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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