Showing : Methylation • reset
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Error while using ChAMP
champ methylation illuminahumanmethylation450k.db illumina450k
updated 8.8 years ago by ▴ 90 • written 8.8 years ago by ▴ 20
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0
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1.3k
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Creating a GenomicRatioSet with non minfi normalized data
minfi methylation illumina450k
8.8 years ago Bioinformatician_R ▴ 20
0
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4
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2.7k
views
Error with Minfi while using read.metharray.exp() and read.metharray function
minfi illumina450k methylation
8.8 years ago Bioinformatician_R ▴ 20
2
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11
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11k
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Minfi error in reading Basename column
methylation minfi
updated 8.9 years ago by ▴ 60 • written 10.0 years ago by • 0
0
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3
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2.1k
views
SVA package for RRBS - bisulfite methylation data
rrbs batch effect methylation sva
updated 8.9 years ago by • 0 • written 10.1 years ago by ▴ 20
0
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0
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971
views
Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.0 years ago arisarkar88 ▴ 40
0
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1
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2.5k
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News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
9.0 years ago Yuan Tian ▴ 90
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0
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1.9k
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Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads methylation illumina epic microarray
9.0 years ago rasii • 0
0
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0
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1.5k
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Methylation and gene expression
methylation geneexpression
9.1 years ago Asma rabe ▴ 290
14
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12
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12k
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limma lmFit coefficients and p-values
limma methylation ewas
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 30
0
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1
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1.8k
views
ChAMP package library loading error
methylation package
9.2 years ago sdeshpande • 0
0
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0
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1.2k
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Analysis of MBD-seq data without ssl control using BayMeth
Baymeth methylation MBD-seq Repitools
9.2 years ago pm2015 • 0
2
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0
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1.5k
views
Job: Two Post-doctoral positions at the CRUK Cambridge Institute
cancer methylation rna-seq Job
9.3 years ago Andy Lynch ▴ 120
1
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8
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4.3k
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Normalization starting from beta values in minfi
methylation minfi
written 9.3 years ago by ▴ 290
0
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2
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1.4k
views
Methylation and gene expression data
methylation geneexpression
updated 9.3 years ago by ▴ 130 • written 9.3 years ago by ▴ 290
0
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0
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1.6k
views
ChAMP ComBat step error: Error in if (min(beta.c) == 0) { : missing value where TRUE/FALSE needed
ChAMP methylation illumina450k
9.3 years ago Daniel E. Weeks ▴ 30
0
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1
reply
1.4k
views
Lumi error in importMethylIDAT
lumi methylation illumina
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
0
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0
replies
993
views
illumina HM 450 data
illumina450k methylation
9.4 years ago niutster • 0
0
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1
reply
1.9k
views
Error in Matrix
minfi methylation EPIC microarray illumina
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by • 0
2
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9
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3.5k
views
bumphunter beta values
methylation minfi bumphunter
updated 9.4 years ago by 68k • written 9.4 years ago by ▴ 50
3
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15
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5.4k
views
Installing MethylationEPIC minifest and annotation
minfi methylation illuminahumanmethylationepicmanifest illumina
9.4 years ago rasii • 0
4
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8
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4.6k
views
minfi MethylationEPIC errors
minfi methylation IlluminaHumanMethylationEPICmanifest IlluminaHumanMethylationEPICanno.ilmn10b.hg19
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 50
0
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4
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2.0k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.5 years ago by ★ 6.5k • written 9.5 years ago by ▴ 50
3
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1
reply
1.5k
views
Limma -decideTests interpretation for M-values
limma decidetests methylation
updated 9.5 years ago by 21k • written 9.5 years ago by ▴ 10
1
vote
5
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3.6k
views
About methylation data processing
methylation
updated 9.6 years ago by ▴ 760 • written 9.6 years ago by ▴ 290
3
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1
reply
1.6k
views
two 450K methylation array manifests. where is the difference?
methylation 450k
9.6 years ago Pablo marin-garcia ▴ 90
0
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2
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1.8k
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Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
updated 2.3 years ago by • 0 • written 9.7 years ago by • 0
0
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0
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1.4k
views
Error processing Infinium 450K Methylation data using Minfi
minfi software error methylation illumina450k
9.7 years ago pm2015 • 0
1
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0
replies
2.0k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.8 years ago enricoferrero ▴ 680
6
votes
14
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6.4k
views
How to correctly import Bismark coverage files into bsseq?
bsseq bismark methylation
9.8 years ago enricoferrero ▴ 680
1
vote
1
reply
1.5k
views
Not getting Adjusted p-values from multtest package
multtest methylation adjusted pvalue
updated 9.8 years ago by ▴ 110 • written 9.8 years ago by ▴ 10
0
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0
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2.0k
views
ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
9.9 years ago jdangelo • 0
1
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2
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3.0k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.9 years ago by ★ 6.5k • written 9.9 years ago by ▴ 680
0
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2
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2.2k
views
Reading IDAT files from Illumina HumanMethylation450 BeadChip with beadarray
beadarray illumina methylation microarray
updated 9.9 years ago by 21k • written 9.9 years ago by • 0
2
votes
2
replies
3.2k
views
Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.2 years ago metamaden ▴ 10
0
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1
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2.0k
views
illumina 450k methylation: Cell composition for saliva
methylation minfi illuminahumanmethylation450k.db saliva cell composition
updated 10.4 years ago by ★ 6.5k • written 10.4 years ago by ▴ 120
0
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2
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2.2k
views
BSseq package for Targeted DNA bisulfite sequencing for DMR analysis
methylation DMR analysis
10.5 years ago parker • 0
1
vote
5
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1.7k
views
Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 10.5 years ago by ▴ 80 • written 10.5 years ago by ▴ 370
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0
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1.9k
views
Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
10.6 years ago Andy Lynch ▴ 120
1
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2
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1.9k
views
minfi package QC report error?
minfi methylation illumina
10.9 years ago Brian Smith ▴ 120
2
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2
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1.5k
views
Package for iScan methylation data
methylation iscan
10.9 years ago Brian Smith ▴ 120
0
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2
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2.3k
views
Help resovling"Error in lm.fit" with 'dmpFinder' function in minfi
minfi minfidata illumina methylation dmpfinder
updated 11.0 years ago by 68k • written 11.0 years ago by • 0
142 results • Page 3 of 3
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Comment: org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key by thundernight • 0
I'm actually having the same problem. [Spanish dictionary][1] [1]: https://spanishdictionary.cc
Comment: voomLmFit fitted log-CPM values by Gordon Smyth 52k
The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…
Comment: voomLmFit fitted log-CPM values by Lina ▴ 10
Is the output from fitted(v) in the log2 CPM scale? or CPM scale?
Answer: voomLmFit fitted log-CPM values by Gordon Smyth 52k
Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```
Comment: EuroBioC2024 abstract submission is open! by Finnianfly • 0
What specific requirements should be noted when preparing abstracts for presentation formats such as short talks, package demos, or posters…
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Answer: ROAST compare results with complex design
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea
Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi
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