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Statistics
•
reset
0
votes
0
replies
279
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
5 months ago
Andy Lynch
▴ 120
0
votes
0
replies
327
views
multipollutant models
statistics
Regression
r
limma
8 months ago
Jitendra
▴ 10
0
votes
1
reply
402
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 8 months ago by
Michael Love
42k • written 8 months ago by
lionel.spinelli
• 0
1
vote
1
reply
439
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 10 months ago by
James W. MacDonald
66k • written 10 months ago by
Jitendra
▴ 10
1
vote
1
reply
1.6k
views
FPKM t-test vs DEseq2
DESeq2
statistics
rna-seq
updated 15 months ago by
ATpoint
★ 4.2k • written 15 months ago by
SH
• 0
0
votes
3
replies
1.2k
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 17 months ago by
Lluís Revilla Sancho
▴ 730 • written 17 months ago by
Jitendra
▴ 10
0
votes
0
replies
740
views
Job:
PhD position in Bioinformatics in Jena
Statistics
ComputationalBiology
Aging
MachineLearning
18 months ago
alena.vanboemmel
• 0
0
votes
2
replies
785
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize
statistics
DESeq2
updated 19 months ago by
swbarnes2
★ 1.4k • written 19 months ago by
N
• 0
1
vote
0
replies
721
views
Statistical test for genomic annotation by ChIPseeker
statistics
PeakAnnotation
ChIPseeker
GuangchuangYu
23 months ago
arisarkar88
▴ 40
1
vote
0
replies
838
views
Job:
Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational
teaching
statistics
research
24 months ago
Andy Lynch
▴ 120
1
vote
0
replies
839
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
24 months ago
Andy Lynch
▴ 120
0
votes
6
replies
1.5k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
2.2 years ago
Jitendra
▴ 10
0
votes
3
replies
1.6k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.4 years ago by
Sean Davis
21k • written 2.5 years ago by
Jitendra
▴ 10
3
votes
5
replies
1.4k
views
P adjusted values in Deseq2
DESeq2
Statistics
written 3.5 years ago by
Jesus
• 0
0
votes
2
replies
1.1k
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
2.8 years ago • updated 18 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
996
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq
pathview
statistics
R
3.3 years ago • updated 3.2 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.0k
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
3.4 years ago
m.jackson
• 0
0
votes
0
replies
971
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
3.5 years ago
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
1.2k
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
3.6 years ago
Laura
• 0
0
votes
0
replies
971
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R
statistics
pathview
singlecellRNA-Seq
3.7 years ago • updated 3.3 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
1.2k
views
Re-calculation of Padj (P adjusted value)
statistics
Benjamini–Hochberg procedure
deseq2
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
Matan G.
▴ 60
2
votes
0
replies
914
views
Job:
Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology
statistics
bioinformatics
Job
3.8 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
827
views
Job:
Two Bioinformatics Fellowship Positions at US EPA
bioinformatics
toxicology
Job
sequenicng
statistics
4.0 years ago • updated 3.7 years ago
whduke
• 0
0
votes
0
replies
2.0k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
6.1 years ago • updated 3.7 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
976
views
Job:
Post-Doctoral Research Fellow, Cancer Genomics
genomics
seattle
bioinformatics
data science
statistics
Job
4.2 years ago
Fred Hutch (Recruiting)
▴ 40
3
votes
0
replies
2.3k
views
Job:
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job
proteomics
Job
statistics
4.7 years ago • updated 4.6 years ago
Gordon Smyth
51k
0
votes
0
replies
1.4k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
NGS
R
statistics
genomics
big data
Job
5.5 years ago • updated 4.6 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
861
views
How to handle batch effect and interaction with experimental variables
deseq2
statistics
differential expression
4.7 years ago
A
• 0
0
votes
1
reply
831
views
Exclude interaction terms from the design
deseq2
statistics
modelling
updated 4.8 years ago by
Michael Love
42k • written 4.8 years ago by
polyptwo
• 0
2
votes
2
replies
3.1k
views
How adjusted p-values are calculated in limma
limma
r
transcriptomics
FDR
statistics
updated 4.8 years ago by
Gordon Smyth
51k • written 4.8 years ago by
Wuschel
▴ 10
0
votes
0
replies
1.1k
views
Proteomics data analysis with DEP no replicates
DEP
Proteomics
Statistics
limma
4.9 years ago
tatabox
• 0
3
votes
3
replies
1.5k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2
apeglm
statistics
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
zefrieira
• 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.5 years ago
naglemi
▴ 10
0
votes
0
replies
830
views
package for mismatch distribution?
genetics
statistics
5.5 years ago
myriam.croze07
• 0
1
vote
6
replies
2.9k
views
DESeq2 unbalanced sample size
deseq2
bioconductor
bioinformatics
statistics
updated 17 months ago by
Michael Love
42k • written 5.6 years ago by
casikecola
• 0
1
vote
2
replies
989
views
Newbie to all of this
bioconductor
statistics
5.8 years ago
sportwoo
• 0
8
votes
8
replies
7.1k
views
Voom transformation from counts and normalization to negative values
rnaseq
voom
limma
tcga
statistics
updated 5.8 years ago by
Ryan C. Thompson
★ 7.9k • written 5.8 years ago by
Beginner
▴ 60
1
vote
2
replies
1.0k
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays
microarray
probe
statistics
updated 5.9 years ago by
James W. MacDonald
66k • written 5.9 years ago by
ravelarvargas
• 0
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
5.9 years ago
Andrea Carenzo
• 0
0
votes
2
replies
1.2k
views
comparing two GOstats result lists
gostats
statistics
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
sven.schenk
▴ 20
1
vote
0
replies
1.3k
views
Job:
Statistical Research Associate
biostatistics
statistics
sas
git
assay
Job
6.2 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.3 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.2k
views
News:
SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell
cancer genomics
statistics
News
6.3 years ago
kieranrcampbell
▴ 50
0
votes
0
replies
1.2k
views
Two questions about pathifier package
pathways
statistics
microarray
6.5 years ago
arronar
• 0
27
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 9 months ago by
camillab.
▴ 10 • written 6.8 years ago by
Russ Fraser
▴ 40
2
votes
4
replies
1.3k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 6.8 years ago by
Steve Lianoglou
★ 13k • written 6.8 years ago by
David R
▴ 90
0
votes
0
replies
1.3k
views
Assigning stats to differential peak locations relative to TSS
chipseeker
chipseq
statistics
6.8 years ago
rbronste
▴ 60
0
votes
0
replies
1.6k
views
Job:
Research Scientist in Biostatistics/Bioinformatics
statistics
genetics
genomics
R
Job
7.5 years ago • updated 7.3 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
2.1k
views
how to perform pre ranked GSEA in R?
r
microarray
statistics
GSEA
updated 7.4 years ago by
predeus
• 0 • written 9.4 years ago by
Nemo
▴ 80
0
votes
0
replies
1.3k
views
Job:
Bioinformaticist, Research Programmer
R
genomics
statistics
Job
7.4 years ago
radel
• 0
50 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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maltethodberg
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51k
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