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batch effect in EPIC array data
statistics Epigenetics R
updated 5 weeks ago by ▴ 710 • written 5 weeks ago by ▴ 10
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123
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
11 weeks ago alena.vanboemmel • 0
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2
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172
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 3 months ago by ★ 1.2k • written 3 months ago by • 0
1
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0
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217
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
7 months ago arisarkar88 ▴ 10
1
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256
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
8 months ago Andy Lynch ▴ 120
1
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254
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
8 months ago Andy Lynch ▴ 120
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6
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552
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
10 months ago Jitendra ▴ 10
0
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3
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868
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 13 months ago by 21k • written 14 months ago by ▴ 10
3
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5
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940
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P adjusted values in Deseq2
DESeq2 Statistics
written 2.2 years ago by • 0
0
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2
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488
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
17 months ago • updated 8 weeks ago Wolfgang Huber 13k
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0
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534
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.0 years ago • updated 23 months ago Luo Weijun ★ 1.6k
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577
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
2.1 years ago m.jackson • 0
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0
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546
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
2.2 years ago António Miguel de Jesus Domingues ▴ 490
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658
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
2.3 years ago Laura • 0
0
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0
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522
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
2.3 years ago • updated 2.0 years ago Luo Weijun ★ 1.6k
1
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2
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546
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 2.5 years ago by 39k • written 2.5 years ago by ▴ 50
2
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0
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537
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
2.5 years ago Johannes Rainer ★ 2.0k
0
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0
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449
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
2.7 years ago • updated 2.4 years ago whduke • 0
0
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0
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
4.7 years ago • updated 2.3 years ago Luo Weijun ★ 1.6k
1
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0
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493
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
2.8 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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1.8k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
3.4 years ago • updated 3.2 years ago Gordon Smyth 47k
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0
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1.0k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.1 years ago • updated 3.3 years ago Luo Weijun ★ 1.6k
0
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1
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359
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
3.4 years ago A • 0
0
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1
reply
425
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 3.4 years ago by 39k • written 3.4 years ago by • 0
2
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2
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1.5k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 3.5 years ago by 47k • written 3.5 years ago by ▴ 10
0
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0
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606
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
3.6 years ago tatabox • 0
3
votes
3
replies
760
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 3.8 years ago by 39k • written 3.8 years ago by • 0
0
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1
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604
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.1 years ago naglemi ▴ 10
0
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0
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473
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package for mismatch distribution?
genetics statistics
4.2 years ago myriam.croze07 • 0
1
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6
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1.8k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 4 weeks ago by 39k • written 4.3 years ago by • 0
1
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2
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606
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Newbie to all of this
bioconductor statistics
4.4 years ago sportwoo • 0
8
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8
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4.7k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 4.5 years ago by 7.8k • written 4.5 years ago by ▴ 50
1
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2
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612
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 4.6 years ago by 62k • written 4.6 years ago by • 0
1
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4
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821
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
4.6 years ago Andrea Carenzo • 0
0
votes
2
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679
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comparing two GOstats result lists
gostats statistics
updated 4.8 years ago by 62k • written 4.8 years ago by ▴ 20
1
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0
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771
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
4.9 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
724
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
5.0 years ago floriandeckert ▴ 30
0
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0
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738
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
5.0 years ago kieranrcampbell ▴ 50
0
votes
0
replies
694
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Two questions about pathifier package
pathways statistics microarray
5.2 years ago arronar • 0
23
votes
6
replies
7.7k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 5.5 years ago by 62k • written 5.5 years ago by ▴ 30
2
votes
4
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776
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 5.5 years ago by 13k • written 5.5 years ago by ▴ 70
0
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0
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803
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
5.5 years ago rbronste ▴ 60
0
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0
replies
1.1k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
6.1 years ago • updated 6.0 years ago Luo Weijun ★ 1.6k
1
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2
replies
1.7k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.1 years ago by • 0 • written 8.1 years ago by ▴ 80
0
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0
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937
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Job: Bioinformaticist, Research Programmer
R genomics statistics Job
6.1 years ago radel • 0
1
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2
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2.3k
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the statistical test that DESeq2 use
deseq2 statistics
updated 6.1 years ago by 7.8k • written 6.1 years ago by • 0
2
votes
2
replies
6.0k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
6.3 years ago jol.espinoz ▴ 40
1
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0
replies
1.3k
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Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
6.3 years ago Bernd Fischer ▴ 550
0
votes
0
replies
904
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
6.4 years ago mmartin ▴ 20
0
votes
0
replies
947
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
6.7 years ago • updated 6.5 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
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Answer: *** caught segfault *** , cause 'memory not mapped' by James W. MacDonald 62k
You are unfortunately running out of RAM. As you note, you could possibly use `frma`, after generating frozen vectors using the `frmaTools`…
Comment: Help with Error in DiffBind by Chris • 0
Thanks Rory! result <- dba(samples) Error in if ((length(callers) == 1) & (callers[1] == "counts")) { : argument is of len…
Answer: Help with Error in DiffBind by Rory Stark ★ 4.7k
In your case, with only two replicates in each sample group, you can not perform a default analysis using only `dba.analyze()`. I suggest t…
Comment: Help with Error in DiffBind by Rory Stark ★ 4.7k
Looks like you should either delete the file > /labs/PI/atacseq_output_03172023/bwa/merged_library/DISEASED_REP2.mLb.clN.sorted.bam.bai …
Comment: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k
``` > options(timeout = 1e6) > z <- getBM(snp_attributes, c("ensembl_gene","so_mini_parent_name"), list("ENSG00000138376", "synonymous_vari…
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WGCNA: Module preservation vs consensus analysis
WGCNA: Module preservation vs consensus analysis
Answer: Help with Error in DiffBind
Comment: Help with Error in DiffBind
Comment: how can I do gene differential analysis on data after vst
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