Showing : alignment • reset
0
votes
2
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494
views
Memory error while running alignments
DECIPHER Alignment
updated 7 weeks ago by ★ 4.0k • written 5 months ago by • 0
0
votes
2
replies
1.2k
views
R session aborts after running align function on Rsubread
Rsubread Alignment
updated 2.4 years ago by ★ 3.6k • written 2.4 years ago by • 0
0
votes
2
replies
1.4k
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 2.7 years ago by ▴ 70
0
votes
1
reply
819
views
Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
0
votes
3
replies
1.2k
views
Multitasking and Rbwa
Rbwa Alignment
written 2.6 years ago by • 0
0
votes
0
replies
664
views
Align to reference genome
Alignment
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
0
votes
0
replies
1.2k
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
2.9 years ago agamemnon • 0
0
votes
0
replies
1.2k
views
Avoid end gap penalty in Biostrings::pairwiseAlignment
Alignment Biostrings
3.0 years ago vonSkopnik • 0
0
votes
2
replies
1.4k
views
Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ?
Alignment Biostrings
updated 15 months ago by ▴ 20 • written 3.1 years ago by • 0
0
votes
1
reply
3.1k
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123 VariantFiltering Alignment VariantAnnotation
updated 3.2 years ago by 68k • written 3.2 years ago by ▴ 30
0
votes
0
replies
1.2k
views
Edit alignment in msa
alig msa Alignment
3.3 years ago Luis • 0
0
votes
2
replies
1.5k
views
Rsubread align --R session aborts
RNA Alignment Rsubread
3.4 years ago sreekalasn • 0
0
votes
0
replies
1.2k
views
SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align Alignment subread
3.8 years ago saira • 0
0
votes
1
reply
1.3k
views
segfault memory not mapped when using sortReadsByCoordinates = TRUE in Rsubread align()
Rsubread Alignment
updated 3.9 years ago by ▴ 450 • written 3.9 years ago by • 0
0
votes
0
replies
1.1k
views
Pairwise alignment results with the original coordinates.
Biostrings Alignment
3.9 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.6k
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
4.2 years ago Charles Plessy ▴ 180
2
votes
2
replies
2.0k
views
Rsubread doesn't output a .bai file
Rsubread align Alignment
updated 4.5 years ago by 53k • written 4.5 years ago by • 0
0
votes
5
replies
2.4k
views
DECIPHER maximum allowable size
DECIPHER Alignment alig
updated 4.7 years ago by ▴ 150 • written 4.7 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl Alignment QuasR
updated 4.9 years ago by ▴ 350 • written 4.9 years ago by • 0
0
votes
3
replies
2.6k
views
Rsubread unable to return alignments
Rsubread Alignment
updated 5.1 years ago by ▴ 450 • written 5.1 years ago by • 0
0
votes
2
replies
1.3k
views
insufficient alignment
DECIPHER Alignment
5.2 years ago julius_vn • 0
0
votes
2
replies
1.5k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
5.2 years ago Vaibhav • 0
0
votes
3
replies
2.7k
views
Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
XCMS LC-MS LC-MS/MS Alignment
updated 5.7 years ago by ★ 2.1k • written 5.7 years ago by • 0
0
votes
0
replies
1.1k
views
concatenating a proteome to use Biostrings pairwiseAlignment
Biostrings alignment
6.7 years ago Juliet Hannah ▴ 360
0
votes
9
replies
2.9k
views
visualizing alignment without realignment
msa alignment visualization
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
0
replies
961
views
Multiple alignment solution for a character object of short fragments
r alignment
6.9 years ago r.tor • 0
0
votes
9
replies
3.8k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread alignment align
7.1 years ago A ▴ 60
0
votes
0
replies
1.2k
views
Quantifying reporter expression to validate sequencing
alignment Fastq fasta
7.2 years ago A ▴ 60
2
votes
1
reply
1.6k
views
Rsubread for microbiome data analysis: genome >4GB
alignment rsubread microbiome
updated 7.2 years ago by ★ 3.6k • written 7.2 years ago by ▴ 870
0
votes
16
replies
5.6k
views
Error while using buildindex for human genome
rsubread buildindex fasta alignment
7.2 years ago writetoroopali • 0
0
votes
0
replies
1.7k
views
Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM samtools pairwisealignment alignment blastn
7.4 years ago ktehmsen • 0
0
votes
0
replies
1.6k
views
problem for finding relative Version GTF file for my .fa file
alignment BWA Burrows-Wheeler Alignment Tool
7.5 years ago modarzi ▴ 10
1
vote
1
reply
4.4k
views
Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
updated 7.7 years ago by 68k • written 7.7 years ago by ▴ 10
1
vote
2
replies
2.8k
views
RNA-seq read alignment best practices for low-input samples
limma differential gene expression rnaseq analysis alignment RSEM
updated 8.1 years ago by ★ 29k • written 8.1 years ago by ▴ 10
0
votes
4
replies
2.0k
views
Query with Biostrings pairwise alignment output positon
biostrings alignment pairwisealignment
updated 8.1 years ago by 16k • written 8.1 years ago by • 0
2
votes
4
replies
2.9k
views
running msa (msa) aborts R session
msa alignment r software error
written 8.1 years ago by • 0
0
votes
1
reply
1.7k
views
DECIPHER - AlignSeqs error is.leaf(dend) node stack overflow
decipher alignment
updated 8.2 years ago by ▴ 10 • written 8.2 years ago by • 0
1
vote
4
replies
3.2k
views
How to find the end position of a read?
rsamtools alignment cigar
8.5 years ago Frocha ▴ 20
0
votes
0
replies
1.3k
views
Highlighting only GC mismatches in the Alignment track of Gviz
gviz alignment
8.9 years ago s8shcahk • 0
2
votes
4
replies
2.0k
views
plotting proteases digestion points in a protein
biostrings iranges sequence alignment protein
updated 8.9 years ago by ★ 11k • written 8.9 years ago by ★ 1.5k
2
votes
1
reply
2.3k
views
How to remmove duplicated paired end alignments
alignment duplicate
updated 9.0 years ago by ★ 29k • written 9.0 years ago by ▴ 20
0
votes
0
replies
1.5k
views
Biostrings "global" alignment does NOT return a global alignment
biostrings alignment
9.2 years ago map2085 ▴ 40
0
votes
0
replies
1.4k
views
Figuring out what long decent Phred value unaligned reads are
rnaseq alignment
9.2 years ago Matthew Thornton ▴ 390
0
votes
16
replies
3.7k
views
Variance between runs of Rsubread
rsubread alignment reproducibility
9.3 years ago Isaac Virshup • 0
0
votes
3
replies
3.8k
views
Is there a package for peptide alignment with protein sequences?
Alignment Alignment
updated 9.4 years ago by • 0 • written 12.2 years ago by ★ 13k
3
votes
4
replies
2.2k
views
Error message when trying to use the 'Align' function of the 'Rsubread' package
rsubread rnaseq alignment
updated 9.5 years ago by 53k • written 9.5 years ago by • 0
0
votes
4
replies
2.3k
views
Splicemap (in QuasR) failed while aligning 25mers
QuasR rnaseq alignment splicemap bowtie2
9.8 years ago Gabriella • 0
0
votes
3
replies
2.0k
views
RNAseq_alignment_SpliceMap processing time_QuasR
SpliceMap QuasR RNAseq Alignment
updated 10.0 years ago by ▴ 400 • written 10.0 years ago by ▴ 10
0
votes
1
reply
1.9k
views
QuasR: spliced and unspliced alignment
quasr alignment
updated 10.0 years ago by ▴ 400 • written 10.0 years ago by • 0
3
votes
1
reply
1.8k
views
Rsubread error when aligning (- FATAL: INFLATE-ERROR=-5)
software error rsubread alignment
updated 10.1 years ago by ★ 3.6k • written 10.1 years ago by ▴ 420
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