Showing : biocinstaller • reset
5
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5
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3.6k
views
package 'BiocInstaller' is not available (for R version 3.4.4)
BiocInstaller
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
votes
5
replies
14k
views
Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 3.9 years ago by ▴ 10 • written 7.4 years ago by • 0
1
vote
3
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1.6k
views
Error by installing BiocManager
BiocInstaller BiocManager Bioconductor
4.8 years ago adklts • 0
1
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2
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2.1k
views
Rsubread package not available?
Rsubread BiocInstaller
updated 6.2 years ago by 53k • written 13.9 years ago by ▴ 410
0
votes
3
replies
1.8k
views
biocLite() wants to update current packages
BiocInstaller
updated 6.5 years ago by 4.2k • written 6.5 years ago by • 0
0
votes
3
replies
1.4k
views
Troubles with mzR and BiocInstaller
mzr rcpp biocinstaller
6.9 years ago • updated 6.8 years ago petr.hasler • 0
1
vote
6
replies
3.1k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran biocinstaller biocmanager
updated 7.0 years ago by 25k • written 7.0 years ago by ▴ 130
0
votes
2
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11k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 7.1 years ago by 68k • written 7.1 years ago by ▴ 20
5
votes
5
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2.9k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 150
0
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1
reply
2.3k
views
R says include dir is empty, but it's not.
R bioconductor biocinstaller package installation
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 20
1
vote
2
replies
1.5k
views
cannot find function even though KEGGgraph package supposedly installed
kegggraph biocinstaller
updated 7.3 years ago by ★ 6.6k • written 7.3 years ago by ▴ 10
1
vote
1
reply
1.7k
views
Installing DESeq2 error: missing value where TRUE/FALSE needed
deseq2 error biocinstaller
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
1
vote
3
replies
1.8k
views
Trouble installing BiocInstaller
biocinstaller
updated 7.5 years ago by 25k • written 7.5 years ago by ▴ 10
3
votes
2
replies
2.0k
views
Unable to install a Bioconductor package to local directory
error biocinstaller
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
votes
6
replies
2.2k
views
Illumina Methylation Manifest Install
Install biocinstaller package installation
7.5 years ago julieumn • 0
0
votes
1
reply
1.4k
views
installation of Biocunductor packages in My home directory.
biocinstaller package installation installr
7.5 years ago vinod.acear ▴ 50
0
votes
1
reply
2.2k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
1
vote
1
reply
3.9k
views
Cannot use Bioconductor with new conda R installation?
bioconductor biocinstaller installation conda
7.7 years ago jol.espinoz ▴ 40
2
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2
replies
2.2k
views
BiomaRT URLs down? 404 Not Found
biomart bioconductor support.bioconductor.org biocinstaller install
7.8 years ago n.pantelireis16 • 0
0
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2
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1.3k
views
Predefine default siteRepos for biocLite
biocinstaller bioclite
7.9 years ago Martin Marcher • 0
2
votes
7
replies
4.0k
views
Bioconductor installing pakage error, R 3.4.2, Ubuntu 17.10
bioconductor biocinstaller package installation
8.0 years ago martyferr90 ▴ 20
0
votes
2
replies
3.4k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 8.0 years ago by 68k • written 8.0 years ago by ★ 2.0k
1
vote
0
replies
1.4k
views
Reinstalling failing - Check packages for root user, too
biocinstaller root installation installation problem
8.0 years ago charles.tilford ▴ 10
8
votes
5
replies
2.3k
views
Trouble installing bioconductor
biocinstaller installation
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 50
0
votes
2
replies
6.7k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
8.2 years ago sebastien200109 • 0
0
votes
3
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2.3k
views
Bioconductor installation problem (MacOSX El-Capitan)
biocinstaller
8.4 years ago zhanxw • 0
1
vote
3
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1.8k
views
Bioconductor Software download
biocinstaller bioconductor download
8.5 years ago s.munster ▴ 40
2
votes
2
replies
2.4k
views
BioC and genevisR and maftools
genevisr maftools bioconductor biocinstaller
8.8 years ago Bogdan ▴ 670
0
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4
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1.9k
views
BiocInstaller fails to load with older R within a 'suppressMessages()' context
biocinstaller
updated 9.0 years ago by 25k • written 9.0 years ago by ▴ 130
0
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7
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3.7k
views
BiocInstaller wants version of R that is not available yet
bioconductor error biocinstaller package installation install
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
0
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5
replies
4.6k
views
source(biocLite.R) leads to this error >>> Peer certificate cannot be authenticated with given CA certificates
biocinstaller installation install source conda
updated 9.2 years ago by 25k • written 9.2 years ago by ▴ 40
3
votes
1
reply
1.7k
views
Offline loading of BiocInstaller or depending packages and connection timeout
BiocInstaller affy
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 30
1
vote
5
replies
2.4k
views
Making package compatible with old version of R/Bioconductor
bioconductor R software error biocinstaller
9.4 years ago gabriel.hoffman ▴ 170
0
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1
reply
1.6k
views
help installing bioconductor workflows
workflows biocinstaller error
9.5 years ago rocknrollscience • 0
1
vote
1
reply
2.1k
views
RUVSeq installation problems
RUVSeq bioconductor biocinstaller
updated 9.8 years ago by ▴ 980 • written 9.8 years ago by • 0
3
votes
7
replies
3.1k
views
Workflows in BioC 3.2
workflows installation biocinstaller
updated 9.8 years ago by • 0 • written 10.0 years ago by ▴ 980
1
vote
11
replies
5.5k
views
Error when install ggbio
ggbio biocinstaller
updated 9.8 years ago by • 0 • written 9.9 years ago by ▴ 20
0
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2
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2.0k
views
Package installation errors for Bioconductor and easyRNASeq
installation biocinstaller easyrnaseq
updated 9.9 years ago by 25k • written 9.9 years ago by • 0
0
votes
1
reply
1.5k
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller biocupgrade
updated 9.9 years ago by 68k • written 9.9 years ago by • 0
1
vote
14
replies
14k
views
Unable to connect from R 3.2.2
biocinstaller source
10.0 years ago • updated 9.9 years ago michel.renou • 0
0
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0
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1.9k
views
Problem installing latest Bioconductor version
biocinstaller software error
10.0 years ago vassily • 0
0
votes
4
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6.5k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller bioclite
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 890
0
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20
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13k
views
BiocInstaller’ is not available (for R version 3.2.2)
biocinstaller
10.2 years ago anikumar.murugan • 0
0
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2
replies
4.5k
views
biocLite() upgrade issue when same package in 2 libraries
biocinstaller
10.3 years ago Jenny Drnevich ★ 2.0k
1
vote
5
replies
3.2k
views
bioclite lib.loc and R_LIBS_USER
biocinstaller
10.3 years ago Janet Young ▴ 740
1
vote
1
reply
5.4k
views
Problems installing S4Vectors using Bioconductor version 3.0 (BiocInstaller 1.16.5), R version 3.2.1.
install installation biocinstaller
10.3 years ago tresch • 0
2
votes
9
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2.5k
views
broken download for source tarball of BiocInstaller 1.16.3
download biocinstaller
10.3 years ago kenneth.hoste ▴ 20
0
votes
2
replies
3.2k
views
Loading BiocInstaller fails when affy is loaded
biocinstaller
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 180
0
votes
1
reply
2.1k
views
package ‘Ruuid’ is not available (as a binary package for R version 3.1.3)
ruuid biocinstaller
updated 10.4 years ago by ★ 13k • written 10.4 years ago by • 0
3
votes
11
replies
7.1k
views
Problems getting Bioc 3.1 after upgrade to R_3.2.0
biocinstaller r update
10.5 years ago meeta.mistry ▴ 30
107 results • Page 1 of 3
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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