Showing : bioclite • reset
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Problem with installing "biocLite" using R4.2.0
biocLite
updated 3.5 years ago by ▴ 760 • written 3.5 years ago by • 0
1
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1
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2.5k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 3.5 years ago by ★ 6.6k • written 3.5 years ago by • 0
3
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2
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26k
views
biocLite R Version
biocLite
updated 5.0 years ago by 700 • written 5.0 years ago by • 0
1
vote
2
replies
4.5k
views
BiocLite installation issues
BiocLite
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 10
0
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1
reply
1.5k
views
I have installed bioconductor, R still asks me to install it
bioconductor biocLite GEOquery package
updated 5.8 years ago by ★ 13k • written 5.8 years ago by • 0
6
votes
3
replies
13k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 5.9 years ago by 4.2k • written 5.9 years ago by • 0
1
vote
3
replies
2.9k
views
update all/some/none how to set default to "update all"
biocLite update all default ask
updated 6.7 years ago by ▴ 30 • written 6.7 years ago by ▴ 10
5
votes
11
replies
3.5k
views
Error while installing Phyloseq using biocLite
bioclite phyloseq install error
7.0 years ago khp ▴ 30
2
votes
2
replies
1.4k
views
biocLite doesn't work
bioconductor bioclite
updated 7.1 years ago by 4.2k • written 7.1 years ago by • 0
5
votes
5
replies
2.9k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite package installation withr biocinstaller rhtslib
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 150
1
vote
4
replies
2.7k
views
Problem installing Bioconductor
biocLite
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
1
vote
2
replies
2.4k
views
Trouble Installing Bioconductor Basic Packages
R bioclite installation problem linuxmint virtualbox
updated 7.2 years ago by 68k • written 7.2 years ago by • 0
0
votes
2
replies
1.9k
views
Unable to install Bioconductor packages following R upgrade to 3.5.1
bioclite bioconductor
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
3
votes
5
replies
2.4k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO bioclite R3.5 mac os x annotationdbi
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 30
1
vote
2
replies
4.2k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2 biocLite
updated 7.5 years ago by ★ 6.6k • written 7.5 years ago by • 0
1
vote
3
replies
1.9k
views
Error biocLite() newest version of ChAMP
R bioclite champ
7.5 years ago rosa_hegi ▴ 10
0
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2
replies
2.6k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
7.6 years ago cpat • 0
0
votes
4
replies
3.2k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 7.7 years ago by ★ 1.3k • written 8.1 years ago by ▴ 70
6
votes
2
replies
2.2k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 7.7 years ago by ★ 6.6k • written 7.7 years ago by ▴ 10
0
votes
9
replies
4.2k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 7.7 years ago by ▴ 80 • written 9.3 years ago by ▴ 40
1
vote
1
reply
4.5k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
0
votes
1
reply
1.7k
views
biocLite("lpsymphony") consistently fails with linker errors (can't find static libraries to link)
lpsymphony package installation bioclite
updated 7.9 years ago by ▴ 10 • written 7.9 years ago by • 0
0
votes
2
replies
1.3k
views
Predefine default siteRepos for biocLite
biocinstaller bioclite
7.9 years ago Martin Marcher • 0
0
votes
4
replies
1.9k
views
How could I upgrade 191 old packages in my directory?
bioclite
updated 7.9 years ago by 25k • written 7.9 years ago by • 0
0
votes
2
replies
3.4k
views
Problem using biocLite() to update packages
biocLite BiocInstaller variantannotation
updated 8.0 years ago by 68k • written 8.0 years ago by ★ 2.0k
2
votes
5
replies
1.9k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor bioclite
updated 8.0 years ago by 4.2k • written 8.0 years ago by ▴ 10
0
votes
2
replies
1.8k
views
problem in installing bioClite
installation problem biocLite
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
6
votes
8
replies
8.9k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
8.0 years ago p.janitza ▴ 50
0
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2
replies
2.4k
views
How to permanently add custom repositories to BiocLite
bioclite repository repos
8.1 years ago arnau.bria • 0
4
votes
4
replies
8.9k
views
Problems install R XML package on CentOS 7
r packages centos7 bioclite libxml2
updated 8.1 years ago by ▴ 120 • written 8.1 years ago by ▴ 10
0
votes
2
replies
6.7k
views
Unable to install any bioconductor packages
R biocinstaller bioclite package installation
8.2 years ago sebastien200109 • 0
0
votes
1
reply
1.5k
views
Cannot load bioclite packages
bioclite
updated 8.2 years ago by 25k • written 8.2 years ago by • 0
0
votes
4
replies
1.9k
views
biocLITE annotation Rstudio
annotation bioclite
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
0
votes
0
replies
1.1k
views
using BiocLite() on Ubuntu Xenial with its default R 3.2.3 release
bioclite
8.3 years ago howarth.mailing.lists ▴ 10
0
votes
3
replies
2.1k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 8.3 years ago by 68k • written 8.3 years ago by • 0
0
votes
5
replies
3.6k
views
reactome.db installation problem
reactome.db bioclite
8.5 years ago Jan-Jaap • 0
0
votes
4
replies
2.8k
views
Bioconductor - not updating
bioconductor R bioclite
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
0
votes
1
reply
1.9k
views
Package dependency GenomicFeatures is installed but cannot be found
genomicfeatures bioclite package installation
8.5 years ago cqe20 • 0
0
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0
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1.1k
views
HowTo: install just html help on top of existing packages
bioclite package installation update
8.6 years ago Malcolm Cook ★ 1.6k
0
votes
4
replies
5.3k
views
Problems with RSQLite compilation
rsqlite bioconductor bioclite rcpp.h
updated 8.8 years ago by 25k • written 8.8 years ago by • 0
2
votes
6
replies
2.0k
views
DESeq2 "summarizeOverlaps" "se" not working, freezing, or too slow
bioclite bioconductor summarizeoverlaps genomicfeatures genomicalignments
updated 8.9 years ago by 43k • written 8.9 years ago by • 0
2
votes
1
reply
4.9k
views
Upgrade to Bioconductor 3.4 - problems with R
r update upgrade bioclite
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
0
votes
1
reply
922
views
News: Bioc 'devel' repository temporarily not available
biocLIte News
9.0 years ago Martin Morgan 25k
9
votes
6
replies
11k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
9.3 years ago kjo ▴ 70
0
votes
1
reply
1.7k
views
problem installing biocLite, MotifDb.
motifdb bioclite
updated 9.3 years ago by 16k • written 9.3 years ago by • 0
0
votes
2
replies
1.5k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite biocupgrade
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
8
votes
4
replies
7.5k
views
Can't upgrade to Bioconductor 3.3?
bioconductor biocupgrade upgrade update bioclite
9.5 years ago enricoferrero ▴ 680
0
votes
3
replies
1.6k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 40
0
votes
1
reply
2.8k
views
Bioconductor installation problem
installation biocLite
updated 9.8 years ago by 25k • written 9.8 years ago by ▴ 10
2
votes
6
replies
38k
views
Installing Bioclite.R Package
Bioclite install
9.9 years ago louiseapps2 • 0
72 results • Page 1 of 2
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Aaron already answered your question. If you have an HDF5 file, it will be read in as a `TENxMatrix` object, which isn't actually read in -…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Very strange. We have the same package versions. I tried adding the mtx.class, type, and delayed arguments, but it's still making the coun…
Comment: DESeq2 for candidate gene analysis by piffelpaff ▴ 20
thank you so much for answering Dr. Love!
Answer: DESeq2 for candidate gene analysis by Michael Love 43k
Your plan 1 is reasonable. Run DESeq2 on the whole dataset to obtain size factors and moderated dispersion estimates and then extract the u…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
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