Showing : go.db • reset
2
votes
5
replies
148
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 23 hours ago by 65k • written 2 days ago by • 0
2
votes
17
replies
1.0k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 3 months ago by ▴ 730 • written 3 months ago by ▴ 50
0
votes
8
replies
694
views
GOslim missing GO term
GO.db GOslim
4 months ago amanda • 0
0
votes
1
reply
374
views
Which species does GO.db use
GO.db annotationTools
updated 9 months ago by ▴ 730 • written 9 months ago by • 0
0
votes
0
replies
383
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
10 months ago RuBBiT0 ▴ 10
1
vote
0
replies
360
views
Typo in GO.db manual reference
GO.db
12 months ago RuBBiT0 ▴ 10
1
vote
2
replies
879
views
GO.db for Bioconductor 3.17
GO.db devel
14 months ago Amanda D. Clark • 0
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress GO.db GOSemSim
17 months ago Chruut • 0
0
votes
1
reply
677
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
1
vote
1
reply
1.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
23 months ago Lucía ▴ 10
1
vote
6
replies
1.1k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.3 years ago by 65k • written 2.3 years ago by • 0
0
votes
1
reply
2.3k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
2.5 years ago Yang • 0
0
votes
1
reply
908
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
1
vote
6
replies
1.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 2.6 years ago by • 0 • written 2.7 years ago by ▴ 40
0
votes
1
reply
935
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
2.8 years ago jabbar_campbell • 0
2
votes
2
replies
994
views
retrieve gene IDs from GO.db GO
GO GO.db
3.0 years ago decppced • 0
1
vote
2
replies
895
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.1 years ago MOHAMMAD • 0
2
votes
1
reply
919
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
3
votes
2
replies
1.9k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.2 years ago by 25k • written 3.2 years ago by ★ 3.9k
0
votes
4
replies
1.3k
views
GO.db package can't be installed
install GO.db
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
1
vote
1
reply
1.3k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
0
votes
4
replies
1.1k
views
topGO "argument is of length zero" error
GO.db topGO
updated 3.5 years ago by 65k • written 3.5 years ago by • 0
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 3.8 years ago by 65k • written 3.8 years ago by ★ 2.0k
0
votes
1
reply
1.7k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
3.9 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.3k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
0
votes
4
replies
1.4k
views
Error attaching TIN
software error GO.db TIN
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
2
replies
711
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
votes
1
reply
1.1k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
2
votes
5
replies
956
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.1 years ago by 65k • written 5.1 years ago by • 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 5.4 years ago by 25k • written 5.4 years ago by ★ 1.0k
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 5.6 years ago by • 0 • written 5.6 years ago by ▴ 10
1
vote
1
reply
1.1k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
2
votes
2
replies
1.4k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
2
votes
2
replies
958
views
Troubles installing GO.db
go.db
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 20
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by 25k • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.1 years ago by ★ 1.3k • written 6.1 years ago by • 0
0
votes
0
replies
1.2k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.1 years ago crafy • 0
0
votes
3
replies
1.1k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.1 years ago dusan.petrovic • 0
0
votes
1
reply
2.3k
views
GO.db failure to install
software error go.db
6.2 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
1
vote
10
replies
2.7k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.0 years ago by 65k • written 7.0 years ago by • 0
0
votes
3
replies
4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.2 years ago Sidi.Ma • 0
0
votes
2
replies
1.5k
views
GO.db will not download
GO.db
7.2 years ago MOD • 0
0
votes
1
reply
1.8k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 10
1
vote
5
replies
5.4k
views
can not able to install go.db
go.db
updated 7.4 years ago by 25k • written 7.4 years ago by • 0
0
votes
1
reply
1.0k
views
I cannot install the package GO.db
GO.db
7.4 years ago chisad • 0
50 results • Page 1 of 1
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Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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