Showing : GO.DB • reset
2
votes
17
replies
3.1k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 14 months ago by ▴ 760 • written 14 months ago by ▴ 50
1
vote
10
replies
3.2k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
0
votes
8
replies
1.4k
views
GOslim missing GO term
GO.db GOslim
16 months ago • updated 15 months ago amanda • 0
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
2
votes
6
replies
4.8k
views
DiffBind installation doesn't work
diffbind go.db
9.8 years ago • updated 9.7 years ago Gary ▴ 20
1
vote
6
replies
1.6k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
1
vote
6
replies
2.7k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.6 years ago by • 0 • written 3.6 years ago by ▴ 40
2
votes
5
replies
729
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 11 months ago by 68k • written 11 months ago by • 0
1
vote
5
replies
5.9k
views
can not able to install go.db
go.db
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
0
votes
5
replies
1.8k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 6.1 years ago by 68k • written 6.1 years ago by • 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
0
votes
5
replies
5.0k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
1
vote
4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 10
0
votes
4
replies
1.8k
views
Error attaching TIN
software error GO.db TIN
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
4
replies
1.7k
views
GO.db package can't be installed
install GO.db
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
0
votes
3
replies
1.8k
views
GO.db installation error
GO go.db
8.5 years ago cananhas • 0
0
votes
3
replies
4.8k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
8.1 years ago Sidi.Ma • 0
0
votes
3
replies
1.4k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
7.1 years ago dusan.petrovic • 0
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 10
3
votes
2
replies
1.1k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
1
vote
2
replies
2.0k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.9 years ago decppced • 0
4
votes
2
replies
2.4k
views
mapIds to get GO terms
annotationdbi go.db
updated 9.3 years ago by 25k • written 9.3 years ago by ▴ 10
3
votes
2
replies
2.7k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 4.2 years ago by 25k • written 4.2 years ago by ★ 4.1k
0
votes
2
replies
1.7k
views
GO.db will not download
GO.db
8.1 years ago MOD • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
4.0 years ago MOHAMMAD • 0
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.7 years ago by 68k • written 4.7 years ago by ★ 2.0k
0
votes
2
replies
2.7k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.4 years ago Chruut • 0
1
vote
2
replies
1.4k
views
GO.db for Bioconductor 3.17
GO.db devel
2.1 years ago Amanda D. Clark • 0
1
vote
2
replies
2.8k
views
Installation Error- GO.db
GO.db
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 10
2
votes
2
replies
1.2k
views
Troubles installing GO.db
go.db
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
2
votes
2
replies
1.7k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
4
votes
2
replies
4.1k
views
Cannot load or update GO.db
GO.db bioclite
9.9 years ago Steve Pederson ▴ 170
1
vote
2
replies
1.9k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.3 years ago by 25k • written 6.3 years ago by ★ 1.1k
2
votes
1
reply
3.3k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.8 years ago Lucía ▴ 30
0
votes
1
reply
1.9k
views
Error attaching GO.db package
GO.db loadnamespace annotation chippeakanno
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 10
0
votes
1
reply
1.4k
views
GO.db/GOSim bugged or my bad?
go.db software error bug
updated 9.9 years ago by 16k • written 9.9 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Gene Ontolology and Annotation
Gene Ontolology Annotation GO.db org.Sc.sgd.db org.Hs.eg.db
updated 9.2 years ago by ▴ 760 • written 9.2 years ago by • 0
1
vote
1
reply
1.9k
views
How to install old version of GO.db in R
GO.db R
updated 8.7 years ago by 25k • written 8.7 years ago by • 0
0
votes
1
reply
1.2k
views
I cannot install the package GO.db
GO.db
8.4 years ago chisad • 0
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 10
0
votes
1
reply
1.9k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error go.db
7.1 years ago matt.a.bennett25890 • 0
0
votes
1
reply
2.0k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
1
vote
1
reply
1.4k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
0
votes
1
reply
1.4k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.7 years ago by 25k • written 5.7 years ago by • 0
0
votes
1
reply
2.3k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.8 years ago Jenny Drnevich ★ 2.0k
1
vote
1
reply
1.8k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
0
votes
1
reply
939
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
50 results • Page 1 of 1
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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder by Gordon Smyth 52k
We recommend that you use voomLmFit() instead of voom+lmFit. We are pretty proud of the speed of glmQLFit and voom, and we hadn't expected…
Answer: Merging EPICV1 and V2 betas by James W. MacDonald 68k
It appears that [SeSAMe][1] has functions meant to do that sort of thing. [1]: https://bioconductor.org/packages/release/bioc/vignet…
Comment: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Benjamin ▴ 20
I have received a response from Ensembl regarding the items I have listed above. I wanted to post it here and will continue to post update…
Answer: Error in cnetplot by Guido Hooiveld ★ 4.1k
Unfortunately you did not show how you generated your input data (the object `enrichment`), nor did you show the output from `sessionInfo()…
Answer: getBM from biomaRt inconsistencies found with .gtf files across multiple species by Mike Smith ★ 6.6k
I think this is because Ensembl can assign different Gene IDs to "the same gene" if it is found both on a standard chromosome and a scaffol…
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Answer: Explannation for ROAST results
Comment: Limma comparing gene expression between base line and one treatment
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
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