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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 2.0 years ago by Basti ▴ 780 • written 2.0 years ago by langziv • 0

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Cytoscape Heatmap heatmaps WGCNA

2.7 years ago gianni.drm • 0

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DESeq2 LRT Heatmap

updated 2.1 years ago by James W. MacDonald 68k • written 3.0 years ago by Laia ▴ 10

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Heatmap ComplexHeatmap colorRamp

4.5 years ago Assa Yeroslaviz ★ 1.5k

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Givz heatmap overlap combine information

5.5 years ago kris.petrini • 0

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heatmap coolmap pheatmap

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heatmap r studio log2foldchange

updated 5.7 years ago by Steve Lianoglou ★ 13k • written 5.7 years ago by alirezabcsaeidi • 0

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GeneOverlap multiple figures heatmap

updated 5.7 years ago by James W. MacDonald 68k • written 5.7 years ago by C T ▴ 140

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WGCNA Heatmap EigenGeneNetworks

6.0 years ago l.s.wijaya • 0

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GOexpress heatmap gene ontology plot

updated 6.1 years ago by kevin.rue ▴ 350 • written 6.1 years ago by Antonio Campos • 0

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matrix heatmap ComplexHeatmap missing values R

updated 6.1 years ago by Zuguang Gu ▴ 290 • written 6.1 years ago by mohammedtoufiq91 ▴ 10

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consensusclusterplus heatmap

6.2 years ago niki.nowhere • 0

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heatmap DEGs RNAseq DESeq2

updated 6.3 years ago by mikhael.manurung ▴ 280 • written 6.3 years ago by danikadigiacomo • 0

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deseq2 RNA-seq Heatmap

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Merlin ▴ 10

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sva deseq2 batch effect PCA heatmap

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by bioyas ▴ 10

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clusterProfiler heatmap GOAnalysis

6.4 years ago anthony.nash ▴ 20

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HeatMap Cairo Graphics Device Failed to create Cairo backend seqplots

updated 6.7 years ago by shepherl 4.2k • written 6.7 years ago by Marcelo Laia ▴ 450

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annotation heatmap

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by shuvadeep.maity • 0

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r R heatmap

6.8 years ago coyoung ▴ 10

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SC3 plot consensus marker heatmap

updated 6.9 years ago by Vladimir Kiselev ▴ 150 • written 6.9 years ago by shaktirielland • 0

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heatmap.3 heatmap

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by Ahdee ▴ 60

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limma normalization heatmap design and contrast matrix cancer

updated 7.0 years ago by Axel Klenk ★ 1.1k • written 7.0 years ago by andreilazar9 • 0

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PureCN heatmap likelihoods

7.1 years ago twtoal ▴ 10

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PureCN Solution Heatmap

updated 7.2 years ago by markus.riester ▴ 130 • written 7.2 years ago by twtoal ▴ 10

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edger heatmap clustering differential gene expression rnaseq

updated 7.4 years ago by Gordon Smyth 53k • written 7.4 years ago by Beginner ▴ 60

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heatmap chippeakanno

updated 7.5 years ago by Ou, Jianhong ★ 1.3k • written 7.5 years ago by gdeniz • 0

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limma heatmap DEGs

updated 7.8 years ago by Gordon Smyth 53k • written 7.8 years ago by lawarde.ankita1 ▴ 30

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gut microbiome heatmap metagenomeseq

updated 7.8 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.8 years ago by arguello.rguez • 0

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diffbind labels heatmap

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by epstein • 0

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compEpiTools error heatmap

updated 8.1 years ago by mattia pelizzola ▴ 200 • written 8.1 years ago by ma1478 • 0

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phyloseq heatmap

updated 8.2 years ago by Wolfgang Huber ★ 13k • written 8.2 years ago by newmanss • 0

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rnaseq ruvseq heatmap

updated 8.3 years ago by James W. MacDonald 68k • written 8.3 years ago by manish20072013 • 0

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deseq2 tpm heatmap pheatmap

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by jarod_v6@libero.it ▴ 40

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deseq2 rlog transformation heatmap scale

8.6 years ago lina.faller ▴ 10

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cummerbund heatmap

8.6 years ago domenico.somma • 0

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heatmap R bioconductor

10.3 years ago • updated 8.6 years ago Deepak Tanwar ▴ 10

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cummerbund heatmap isoforms transcript_id

8.6 years ago domenico.somma • 0

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diffbind heatmap correlation

updated 8.6 years ago by Rory Stark ★ 5.2k • written 8.6 years ago by a.bahraini88 • 0

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metagenomeseq heatmap

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by Key • 0

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heatmap

written 9.5 years ago by giroudpaul ▴ 40

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4.4k

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 9.0 years ago by jokergoo ▴ 200 • written 9.0 years ago by enricoferrero ▴ 680

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pheatmap heatmap

9.0 years ago jarod_v6@libero.it ▴ 40

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R heatmap

9.2 years ago Adam • 0

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diffbind heatmap pearsoncorrelation

updated 9.3 years ago by Rory Stark ★ 5.2k • written 9.4 years ago by shubhibartaria ▴ 10

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diffbind heatmap

9.4 years ago shubhibartaria ▴ 10

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18k

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complexheatmap bioconductor annotation heatmap legend

9.5 years ago • updated 9.4 years ago annkatrin.goepfert ▴ 10

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deseq2 time course heatmap

updated 9.4 years ago by EagleEye ▴ 10 • written 9.4 years ago by rahel14350 ▴ 10

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deseq2 heatmap

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by l.weissenburgermoser • 0

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Heatmap

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by rkp • 0

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heatmap.2 heatmap edgeR deseq2 deseq

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by Zain A Alvi ▴ 10

69 results • Page 1 of 2

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

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