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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 12 months ago by Basti ▴ 780 • written 12 months ago by langziv • 0

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1.1k

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Cytoscape Heatmap heatmaps WGCNA

21 months ago gianni.drm • 0

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1.4k

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DESeq2 LRT Heatmap

updated 13 months ago by James W. MacDonald 67k • written 2.0 years ago by Laia ▴ 10

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Heatmap ComplexHeatmap colorRamp

3.6 years ago Assa Yeroslaviz ★ 1.5k

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766

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Givz heatmap overlap combine information

4.5 years ago kris.petrini • 0

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heatmap coolmap pheatmap

updated 4.6 years ago by Gordon Smyth 51k • written 4.6 years ago by Raito92 ▴ 60

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19k

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heatmap r studio log2foldchange

updated 4.7 years ago by Steve Lianoglou ★ 13k • written 4.7 years ago by alirezabcsaeidi • 0

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875

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GeneOverlap multiple figures heatmap

updated 4.8 years ago by James W. MacDonald 67k • written 4.8 years ago by C T ▴ 140

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WGCNA Heatmap EigenGeneNetworks

5.0 years ago l.s.wijaya • 0

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GOexpress heatmap gene ontology plot

updated 5.1 years ago by kevin.rue ▴ 350 • written 5.1 years ago by Antonio Campos • 0

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matrix heatmap ComplexHeatmap missing values R

updated 5.1 years ago by Zuguang Gu ▴ 290 • written 5.1 years ago by mohammedtoufiq91 ▴ 10

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consensusclusterplus heatmap

5.2 years ago niki.nowhere • 0

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heatmap DEGs RNAseq DESeq2

updated 5.3 years ago by mikhael.manurung ▴ 280 • written 5.3 years ago by danikadigiacomo • 0

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deseq2 RNA-seq Heatmap

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by Merlin ▴ 10

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sva deseq2 batch effect PCA heatmap

updated 5.4 years ago by Michael Love 42k • written 5.4 years ago by bioyas ▴ 10

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clusterProfiler heatmap GOAnalysis

5.5 years ago anthony.nash ▴ 20

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HeatMap Cairo Graphics Device Failed to create Cairo backend seqplots

updated 5.7 years ago by shepherl 4.1k • written 5.7 years ago by Marcelo Laia ▴ 450

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annotation heatmap

updated 5.8 years ago by James W. MacDonald 67k • written 5.8 years ago by shuvadeep.maity • 0

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773

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r R heatmap

5.8 years ago coyoung ▴ 10

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1.5k

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SC3 plot consensus marker heatmap

updated 5.9 years ago by Vladimir Kiselev ▴ 150 • written 5.9 years ago by shaktirielland • 0

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heatmap.3 heatmap

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by Ahdee ▴ 50

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limma normalization heatmap design and contrast matrix cancer

updated 6.0 years ago by Axel Klenk ★ 1.0k • written 6.0 years ago by andreilazar9 • 0

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PureCN heatmap likelihoods

6.1 years ago twtoal ▴ 10

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PureCN Solution Heatmap

updated 6.2 years ago by markus.riester ▴ 130 • written 6.2 years ago by twtoal ▴ 10

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edger heatmap clustering differential gene expression rnaseq

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by Beginner ▴ 60

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heatmap chippeakanno

updated 6.5 years ago by Ou, Jianhong ★ 1.3k • written 6.5 years ago by gdeniz • 0

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limma heatmap DEGs

updated 6.8 years ago by Gordon Smyth 51k • written 6.8 years ago by lawarde.ankita1 ▴ 30

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gut microbiome heatmap metagenomeseq

updated 6.8 years ago by Joseph Nathaniel Paulson ▴ 280 • written 6.8 years ago by arguello.rguez • 0

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diffbind labels heatmap

updated 6.9 years ago by Rory Stark ★ 5.2k • written 6.9 years ago by epstein • 0

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compEpiTools error heatmap

updated 7.1 years ago by mattia pelizzola ▴ 200 • written 7.1 years ago by ma1478 • 0

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phyloseq heatmap

updated 7.2 years ago by Wolfgang Huber ★ 13k • written 7.2 years ago by newmanss • 0

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rnaseq ruvseq heatmap

updated 7.4 years ago by James W. MacDonald 67k • written 7.4 years ago by manish20072013 • 0

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deseq2 tpm heatmap pheatmap

updated 7.4 years ago by Michael Love 42k • written 7.4 years ago by jarod_v6@libero.it ▴ 40

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deseq2 rlog transformation heatmap scale

7.6 years ago lina.faller ▴ 10

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cummerbund heatmap

7.6 years ago domenico.somma • 0

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heatmap R bioconductor

9.3 years ago • updated 7.6 years ago Deepak Tanwar ▴ 10

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1.6k

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cummerbund heatmap isoforms transcript_id

7.6 years ago domenico.somma • 0

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diffbind heatmap correlation

updated 7.6 years ago by Rory Stark ★ 5.2k • written 7.6 years ago by a.bahraini88 • 0

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metagenomeseq heatmap

updated 7.7 years ago by James W. MacDonald 67k • written 7.7 years ago by Key • 0

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heatmap

written 8.6 years ago by giroudpaul ▴ 40

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3.8k

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 8.0 years ago by jokergoo ▴ 200 • written 8.0 years ago by enricoferrero ▴ 660

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pheatmap heatmap

8.1 years ago jarod_v6@libero.it ▴ 40

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R heatmap

8.2 years ago Adam • 0

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1.8k

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diffbind heatmap pearsoncorrelation

updated 8.4 years ago by Rory Stark ★ 5.2k • written 8.4 years ago by shubhibartaria ▴ 10

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1.7k

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diffbind heatmap

8.4 years ago shubhibartaria ▴ 10

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complexheatmap bioconductor annotation heatmap legend

8.5 years ago • updated 8.4 years ago annkatrin.goepfert ▴ 10

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deseq2 time course heatmap

updated 8.4 years ago by EagleEye ▴ 10 • written 8.4 years ago by rahel14350 ▴ 10

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1.9k

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deseq2 heatmap

updated 8.4 years ago by Steve Lianoglou ★ 13k • written 8.4 years ago by l.weissenburgermoser • 0

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Heatmap

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by rkp • 0

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4.8k

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heatmap.2 heatmap edgeR deseq2 deseq

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by Zain A Alvi ▴ 10

50 results • Page 1 of 1

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k