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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 6 months ago by Basti ▴ 780 • written 6 months ago by langziv • 0

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812

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Cytoscape Heatmap heatmaps WGCNA

14 months ago gianni.drm • 0

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934

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DESeq2 LRT Heatmap

updated 7 months ago by James W. MacDonald 65k • written 18 months ago by Laia ▴ 10

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Heatmap ComplexHeatmap colorRamp

3.0 years ago Assa Yeroslaviz ★ 1.5k

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630

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Givz heatmap overlap combine information

4.0 years ago kris.petrini • 0

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heatmap coolmap pheatmap

updated 4.0 years ago by Gordon Smyth 50k • written 4.0 years ago by Raito92 ▴ 60

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heatmap r studio log2foldchange

updated 4.2 years ago by Steve Lianoglou ★ 13k • written 4.2 years ago by alirezabcsaeidi • 0

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694

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GeneOverlap multiple figures heatmap

updated 4.2 years ago by James W. MacDonald 65k • written 4.2 years ago by C T ▴ 140

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WGCNA Heatmap EigenGeneNetworks

4.5 years ago l.s.wijaya • 0

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GOexpress heatmap gene ontology plot

updated 4.6 years ago by kevin.rue ▴ 350 • written 4.6 years ago by Antonio Campos • 0

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matrix heatmap ComplexHeatmap missing values R

updated 4.6 years ago by Zuguang Gu ▴ 260 • written 4.6 years ago by mohammedtoufiq91 ▴ 10

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consensusclusterplus heatmap

4.7 years ago niki.nowhere • 0

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heatmap DEGs RNAseq DESeq2

updated 4.8 years ago by mikhael.manurung ▴ 270 • written 4.8 years ago by danikadigiacomo • 0

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deseq2 RNA-seq Heatmap

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by Merlin ▴ 10

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sva deseq2 batch effect PCA heatmap

updated 4.9 years ago by Michael Love 41k • written 4.9 years ago by bioyas ▴ 10

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clusterProfiler heatmap GOAnalysis

4.9 years ago anthony.nash ▴ 20

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HeatMap Cairo Graphics Device Failed to create Cairo backend seqplots

updated 5.2 years ago by shepherl 3.8k • written 5.2 years ago by Marcelo Laia ▴ 450

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annotation heatmap

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by shuvadeep.maity • 0

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639

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r R heatmap

5.3 years ago coyoung ▴ 10

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heatmap.3 heatmap

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by Ahdee ▴ 50

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SC3 plot consensus marker heatmap

updated 5.4 years ago by Vladimir Kiselev ▴ 150 • written 5.4 years ago by shaktirielland • 0

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limma normalization heatmap design and contrast matrix cancer

updated 5.5 years ago by Axel Klenk ★ 1.0k • written 5.5 years ago by andreilazar9 • 0

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PureCN heatmap likelihoods

5.6 years ago twtoal ▴ 10

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PureCN Solution Heatmap

updated 5.7 years ago by markus.riester ▴ 130 • written 5.7 years ago by twtoal ▴ 10

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edger heatmap clustering differential gene expression rnaseq

updated 5.9 years ago by Gordon Smyth 50k • written 5.9 years ago by Beginner ▴ 60

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963

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heatmap chippeakanno

updated 6.0 years ago by Ou, Jianhong ★ 1.3k • written 6.0 years ago by gdeniz • 0

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limma heatmap DEGs

updated 6.3 years ago by Gordon Smyth 50k • written 6.3 years ago by lawarde.ankita1 ▴ 30

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gut microbiome heatmap metagenomeseq

updated 6.3 years ago by Joseph Nathaniel Paulson ▴ 280 • written 6.3 years ago by arguello.rguez • 0

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diffbind labels heatmap

updated 6.4 years ago by Rory Stark ★ 5.2k • written 6.4 years ago by epstein • 0

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compEpiTools error heatmap

updated 6.6 years ago by mattia pelizzola ▴ 200 • written 6.6 years ago by ma1478 • 0

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phyloseq heatmap

updated 6.6 years ago by Wolfgang Huber ★ 13k • written 6.7 years ago by newmanss • 0

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rnaseq ruvseq heatmap

updated 6.8 years ago by James W. MacDonald 65k • written 6.8 years ago by manish20072013 • 0

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deseq2 tpm heatmap pheatmap

updated 6.9 years ago by Michael Love 41k • written 6.9 years ago by jarod_v6@libero.it ▴ 40

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cummerbund heatmap

7.1 years ago domenico.somma • 0

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cummerbund heatmap isoforms transcript_id

7.1 years ago domenico.somma • 0

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4.9k

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deseq2 rlog transformation heatmap scale

7.1 years ago lina.faller ▴ 10

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2.0k

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diffbind heatmap correlation

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by a.bahraini88 • 0

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metagenomeseq heatmap

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by Key • 0

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3.5k

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 7.5 years ago by jokergoo ▴ 200 • written 7.5 years ago by enricoferrero ▴ 660

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pheatmap heatmap

7.5 years ago jarod_v6@libero.it ▴ 40

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R heatmap

7.7 years ago Adam • 0

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1.5k

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diffbind heatmap pearsoncorrelation

updated 7.8 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by shubhibartaria ▴ 10

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diffbind heatmap

7.9 years ago shubhibartaria ▴ 10

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1.7k

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deseq2 time course heatmap

updated 7.9 years ago by EagleEye ▴ 10 • written 7.9 years ago by rahel14350 ▴ 10

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1.6k

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deseq2 heatmap

updated 7.9 years ago by Steve Lianoglou ★ 13k • written 7.9 years ago by l.weissenburgermoser • 0

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983

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Heatmap

updated 8.0 years ago by Aaron Lun ★ 28k • written 8.0 years ago by rkp • 0

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complexheatmap bioconductor annotation heatmap legend

8.0 years ago • updated 7.9 years ago annkatrin.goepfert ▴ 10

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4.3k

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heatmap.2 heatmap edgeR deseq2 deseq

updated 8.0 years ago by Michael Love 41k • written 8.0 years ago by Zain A Alvi ▴ 10

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cellcode shiny heatmap

updated 8.0 years ago by Andrzej Oleś ▴ 750 • written 8.0 years ago by christopher.clarskon15 ▴ 20

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4.9k

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heatmap

written 8.0 years ago by giroudpaul ▴ 40

50 results • Page 1 of 1

Recent ...

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Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200

`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…

Comment: Help with error using camera() in limma by Chris • 0

Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.

Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0

Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.

Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0

Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks

Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k

The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …

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SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

C: Extremely big genes in annotation TxDb packages

Make custom Txdb class objects from Txdb

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