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NEWS
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News:
Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing
transcription
variantfiltering
annotation
News
10.4 years ago
Matthew Ritchie
▴ 1000
6
votes
6
replies
4.3k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 10.4 years ago by
Guangchuang Yu
★ 1.2k • written 10.4 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.7k
views
News:
Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix
annotation
microarray
News
10.5 years ago
James W. MacDonald
68k
0
votes
0
replies
1.1k
views
News:
support site / tracker / registration site - scheduled downtime tomorrow
news
News
10.5 years ago
Dan Tenenbaum
★ 8.2k
9
votes
1
reply
2.7k
views
News:
Ensembl release 80 is out!
biomart
Ensembl
zebrafish
Rat
1000 genomes phase 3
News
updated 10.5 years ago by
Sonali Arora
▴ 390 • written 10.5 years ago by
Thomas Maurel
▴ 800
0
votes
2
replies
1.9k
views
News:
Looking to attend to a Bioconductor course for biologists in Europe
course
News
updated 10.5 years ago by
andrew.j.skelton73
▴ 370 • written 10.5 years ago by
laianavarromartin
▴ 20
0
votes
0
replies
1.6k
views
News:
BioC 2015 Conference Posters
news
bioc2015
News
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.3k
views
News:
Bioconductor 3.1 is released!
release
News
10.6 years ago
Dan Tenenbaum
★ 8.2k
1
vote
0
replies
1.0k
views
News:
Bioconductor Newsletter - April 2015
newsletter
News
10.6 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.0k
views
News:
Ensembl GRCh37 release 79 data update
biomart
ensembl
release
news
GRCh37
News
10.7 years ago
Thomas Maurel
▴ 800
0
votes
2
replies
2.1k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 10.7 years ago by
Ou, Jianhong
★ 1.3k • written 10.7 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
1.6k
views
News:
Conference in mathematical and quantitative omics, May, 29th, London
conference
News
10.7 years ago
Tiphaine Martin
▴ 40
0
votes
5
replies
2.2k
views
News:
Ensembl 79 release is out!
Ensembl
biomart
release
news
News
updated 10.7 years ago by
Dan Tenenbaum
★ 8.2k • written 10.7 years ago by
amonida
▴ 20
0
votes
0
replies
1.6k
views
News:
OmicCircos was updated
visualization
omiccircos
News
10.7 years ago
Hu, Ying NIH/NCI [E]
▴ 50
0
votes
0
replies
1.7k
views
News:
system maintenance / downtime Wed March 11
news
News
10.7 years ago
Dan Tenenbaum
★ 8.2k
0
votes
0
replies
1.8k
views
News:
4 days left to register for a short course on computational proteomics
proteomics
news
course
massspectrometry
News
10.7 years ago
Olga Vitek
▴ 40
0
votes
1
reply
1.7k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
10.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.8k
views
News:
An introductory course to RNA-seq 17-19 March 2015
rna-seq
course
News
10.8 years ago
rcaloger
▴ 500
0
votes
0
replies
2.2k
views
News:
Call for papers: CIBB 2015, Naples, September 10-12, 2015
conference
bioinformatics
News
10.8 years ago
rancoita.paola
• 0
9
votes
8
replies
7.5k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 10.8 years ago by
remi.tournebize
▴ 10 • written 10.8 years ago by
Guangchuang Yu
★ 1.2k
0
votes
0
replies
2.2k
views
News:
Course announcement: CSAMA 2015 (13th ed.) Statistics and Computing in Genome Data Science
Course
News
10.8 years ago
Wolfgang Huber
★ 13k
2
votes
1
reply
2.1k
views
News:
Announcing a short course in computational and statistical proteomics
proteomics
massspectrometry
R
News
10.8 years ago
vitek.olga
▴ 20
0
votes
0
replies
2.0k
views
News:
Workshop Statistical Learning of Biological Systems - Ascona, Switzerland, May 31 to June 5, 2015
Statistical Learning
Workshop
News
11.2 years ago • updated 10.8 years ago
Wolfgang Huber
★ 13k
1
vote
0
replies
2.3k
views
News:
NGS data analysis training courses at EMBL-EBI
training
News
10.8 years ago
gr231
▴ 10
7
votes
0
replies
2.5k
views
News:
Announcing Docker containers for Bioconductor
docker
News
10.9 years ago
Dan Tenenbaum
★ 8.2k
3
votes
0
replies
1.2k
views
News:
Bioconductor Newsletter - January 2015
news
newsletter
News
10.9 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
2.2k
views
News:
RNAseq data analysis courses: Torino (Italy) : Beginner course March 17-19 2015 & Advance Course April 14-16 2015
rnaseq
mirna
onechannelgui
chimera
News
10.9 years ago
raffaele calogero
▴ 500
0
votes
0
replies
1.4k
views
News:
ISCBSC RSG Turkey Organises Webinars!
webinar
bioinformatics
News
10.9 years ago
zeynep özkeserli
▴ 160
2
votes
1
reply
2.6k
views
News:
Changes to matchGenes in bumphunter
annotation
bumphunter
News
updated 11.0 years ago by
Michael Love
43k • written 11.0 years ago by
rafa
▴ 60
0
votes
1
reply
1.8k
views
News:
Google hangout on Wed December 10th for new package authors
bioconductor
News
updated 11.0 years ago by
Sonali Arora
▴ 390 • written 11.0 years ago by
Marc Carlson
★ 7.2k
0
votes
0
replies
1.5k
views
News:
Ensembl 78 release is out!
Ensembl
Biomart
News
11.0 years ago
amonida
▴ 20
9
votes
4
replies
3.5k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
11.0 years ago
Wei Shi
★ 3.6k
11
votes
0
replies
2.5k
views
News:
Bioconductor 3.0 is released!
news
News
11.1 years ago
Dan Tenenbaum
★ 8.2k
4
votes
0
replies
1.9k
views
News:
Advanced Course: R programming and development 15-16. January 2015 (Thursday-Friday), EMBL Heidelberg
Course
News
11.1 years ago
Wolfgang Huber
★ 13k
3
votes
0
replies
1.7k
views
News:
Course Material from Latest Bioconductor Course (Oct 27 -29, 2014)
course-material
Video
News
11.1 years ago
Sonali Arora
▴ 390
1
vote
1
reply
1.8k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 11.1 years ago by
orkanilbay
• 0 • written 11.1 years ago by
Julie Zhu
★ 4.3k
0
votes
0
replies
2.5k
views
News:
European Bioconductor Developers' Meeting 12th-13th January 2015, Heidelberg
developers
workshop
conference
meeting
News
11.1 years ago
Wolfgang Huber
★ 13k
1
vote
0
replies
1.9k
views
News:
Course Announcement - Next Generation Data Analysis with R/Bioc (Dec 5-8, 2014)
workshop
ngs
training
News
11.1 years ago
Thomas Girke
★ 1.7k
5
votes
7
replies
2.0k
views
News:
Updated support site
news
News
11.1 years ago
Martin Morgan
25k
0
votes
0
replies
1.9k
views
News:
The NIH Software Discovery Index | We invite your comments
software
NIH
index
News
11.1 years ago
Sean Davis
21k
0
votes
0
replies
1.7k
views
News:
Useful information about Ensembl release 77 mart databases
ensembl
biomart
Vervet-AGM
News
11.1 years ago
Thomas Maurel
▴ 800
1
vote
0
replies
2.1k
views
News:
Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics
workshop
news
News
11.1 years ago
gagneur
▴ 10
5
votes
0
replies
1.4k
views
News:
October Newsletter now available
newsletter
News
11.1 years ago
Valerie Obenchain
★ 6.8k
8
votes
0
replies
1.9k
views
News:
Recent course materials now easily searchable
course-material
News
updated 11.2 years ago by
Wolfgang Huber
★ 13k • written 11.2 years ago by
Dan Tenenbaum
★ 8.2k
4
votes
1
reply
2.1k
views
News:
New Flow Cytometry Data Analysis Framework
flowcore
flowcytometry
opencyto
new
News
11.2 years ago
Greg Finak
▴ 150
345 results • Page
7 of 7
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Replies
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
Votes
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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