Showing : Plot • reset
11
votes
15
replies
1.5k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
4.1 years ago baus87 • 0
0
votes
9
replies
248
views
Plotting change over time
deseq2 Plot
updated 17 months ago by 34k • written 17 months ago by • 0
0
votes
6
replies
813
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 4.3 years ago by • 0 • written 4.6 years ago by • 0
0
votes
5
replies
1.1k
views
R plot error
r bioconductor graph plot data representation in graphical forms
6.3 years ago megha.24may • 0
0
votes
5
replies
491
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
2
votes
5
replies
837
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 3.3 years ago by 34k • written 3.3 years ago by ▴ 10
0
votes
4
replies
2.0k
views
heatmap.2 like plot in ggplot
plot
updated 6.9 years ago by 58k • written 6.9 years ago by ▴ 120
2
votes
4
replies
700
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 4.7 years ago by 11k • written 4.7 years ago by ▴ 10
0
votes
3
replies
602
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
3.9 years ago fawazfebin ▴ 30
1
vote
3
replies
354
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 9 months ago by ▴ 90 • written 11 months ago by • 0
2
votes
3
replies
957
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
5.0 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
334
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 20 months ago by ★ 4.1k • written 22 months ago by ▴ 10
1
vote
3
replies
1.6k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 4.7 years ago by 11k • written 4.7 years ago by ▴ 10
1
vote
2
replies
482
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 12 months ago by ▴ 10 • written 12 months ago by • 0
1
vote
2
replies
390
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 23 months ago by ▴ 300 • written 23 months ago by • 0
0
votes
2
replies
300
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
2
votes
2
replies
1.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 6.1 years ago by 58k • written 6.1 years ago by ▴ 40
0
votes
2
replies
2.7k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
6.4 years ago greg.mulhearn • 0
2
votes
2
replies
523
views
Change legend names when using plotBCV
edger plot Tutorial
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
2
votes
2
replies
779
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 5.2 years ago by ▴ 130 • written 5.2 years ago by ▴ 10
1
vote
2
replies
1.2k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 4.5 years ago by ▴ 90 • written 4.5 years ago by ▴ 10
1
vote
2
replies
1.0k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 6.1 years ago by ★ 1.6k • written 6.1 years ago by ▴ 40
0
votes
2
replies
110
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
6 weeks ago karlaarz • 0
0
votes
2
replies
240
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 7 months ago by ▴ 830 • written 7 months ago by • 0
0
votes
2
replies
239
views
Correlation plot how to improve?
plot correlation
23 months ago annkolman78 • 0
2
votes
2
replies
223
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 11 months ago by ★ 4.1k • written 11 months ago by • 0
0
votes
1
reply
490
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 2.8 years ago by ▴ 150 • written 2.8 years ago by • 0
0
votes
1
reply
708
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 100
0
votes
1
reply
3.7k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 6.6 years ago by 58k • written 6.6 years ago by ▴ 10
1
vote
1
reply
922
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 5.6 years ago by 58k • written 5.6 years ago by ▴ 50
4
votes
1
reply
1.3k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 5.2 years ago by ★ 1.6k • written 5.2 years ago by ▴ 10
1
vote
1
reply
918
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
5.0 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
732
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
4.8 years ago • updated 4.4 years ago juan-pablo.cerapio-arroyo ▴ 10
0
votes
1
reply
724
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 4.3 years ago by 13k • written 4.3 years ago by • 0
2
votes
1
reply
485
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 4.2 years ago by ★ 2.0k • written 4.2 years ago by ▴ 40
0
votes
1
reply
912
views
Plotting coverage from bam files
bam plot
updated 3.4 years ago by 58k • written 3.4 years ago by ▴ 40
0
votes
1
reply
1.7k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 3.0 years ago by ▴ 390 • written 3.0 years ago by • 0
0
votes
1
reply
788
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
6.2 years ago bruce.moran ▴ 30
0
votes
1
reply
373
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 2.8 years ago by 58k • written 2.8 years ago by • 0
0
votes
1
reply
258
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by • 0
0
votes
1
reply
259
views
How to create a violin plot
plot ggcyte
updated 23 months ago by 3.4k • written 23 months ago by • 0
0
votes
1
reply
206
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 10 months ago by 2.8k • written 10 months ago by • 0
0
votes
1
reply
174
views
two tracks have the same axis
plot Gviz
10 months ago 腾 • 0
0
votes
0
replies
515
views
Plotting False discoveries vs genes selected
plot
5.2 years ago humberto_munoz • 0
0
votes
0
replies
122
views
Gviz: set colors for UTRs
plot color Gviz utr
5 months ago ginlucks • 0
0
votes
0
replies
633
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
6.1 years ago koenhendriks89 • 0
0
votes
0
replies
609
views
changing the plot type in minet package
minet plot
5.5 years ago Angel ▴ 40
0
votes
0
replies
146
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
17 months ago raquelponti • 0
0
votes
0
replies
576
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
4.0 years ago anupriyaverma1408 • 0
49 results • Page 1 of 1
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Answer: Effect size using likelihood ratio test in DESeq2 by ATpoint ▴ 830
The thing with time-courses is that you do not necessarily have binary patterns of gene expression changes being only up-or downregulated. …
Answer: Undefined columns error R cytometry analysis by Jiang, Mike ★ 1.3k
I see you are trying to fill the missing transform info to `gs_bcell_auto` , which is a hack, but since you seems to know what you are doin…
Comment: how to get MFI stats from data by Jiang, Mike ★ 1.3k
Can you grant the public caccess to you fcs to reproduce your issue?
Answer: Getting a dataset that only contains the flow data within the gated area by Jiang, Mike ★ 1.3k
You didn't post your example code, so here is my best guess of your workflow > library(flowCore) > library(flowWorkspace) …
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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