Showing : Plot • reset
11
votes
15
replies
2.7k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
6.7 years ago baus87 • 0
0
votes
9
replies
1.2k
views
Plotting change over time
deseq2 Plot
updated 4.1 years ago by 41k • written 4.1 years ago by • 0
0
votes
6
replies
1.5k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.0 years ago by • 0 • written 7.2 years ago by ▴ 10
2
votes
5
replies
1.7k
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 5.9 years ago by 41k • written 5.9 years ago by ▴ 10
0
votes
5
replies
2.8k
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
0
votes
5
replies
2.0k
views
R plot error
r bioconductor graph plot data representation in graphical forms
8.9 years ago megha.24may • 0
0
votes
4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 15 months ago by 65k • written 2.7 years ago by • 0
0
votes
4
replies
2.6k
views
heatmap.2 like plot in ggplot
plot
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 120
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
0
votes
3
replies
1.2k
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
6.5 years ago fawazfebin ▴ 60
1
vote
3
replies
2.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 190 • written 3.5 years ago by • 0
0
votes
3
replies
1.5k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 4.3 years ago by ★ 5.2k • written 4.4 years ago by ▴ 10
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
1
vote
2
replies
1.8k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by • 0
0
votes
2
replies
5.1k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.0 years ago greg.mulhearn • 0
2
votes
2
replies
1.8k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 8.7 years ago by 65k • written 8.8 years ago by ▴ 40
1
vote
2
replies
1.6k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 8.7 years ago by ★ 1.6k • written 8.7 years ago by ▴ 40
2
votes
2
replies
1.3k
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 7.8 years ago by ▴ 130 • written 7.8 years ago by ▴ 10
1
vote
2
replies
1.9k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 7.1 years ago by ▴ 90 • written 7.1 years ago by ▴ 10
2
votes
2
replies
1.3k
views
Change legend names when using plotBCV
edger plot Tutorial
updated 5.7 years ago by 50k • written 5.7 years ago by • 0
0
votes
2
replies
972
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 4.5 years ago by ▴ 350 • written 4.5 years ago by • 0
0
votes
2
replies
907
views
Correlation plot how to improve?
plot correlation
4.5 years ago annkolman78 • 0
2
votes
2
replies
1.0k
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 3.5 years ago by ★ 5.2k • written 3.5 years ago by • 0
0
votes
2
replies
3.6k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 3.2 years ago by ★ 4.0k • written 3.2 years ago by • 0
0
votes
2
replies
3.7k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.1 years ago by ▴ 20 • written 2.1 years ago by • 0
4
votes
1
reply
2.0k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 7.8 years ago by ★ 1.6k • written 7.8 years ago by ▴ 10
0
votes
1
reply
1.2k
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 9.2 years ago by 50k • written 9.2 years ago by ▴ 100
0
votes
1
reply
4.2k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks plot
updated 9.2 years ago by 65k • written 9.2 years ago by ▴ 10
0
votes
1
reply
788
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 3.4 years ago by 3.8k • written 3.4 years ago by • 0
0
votes
1
reply
746
views
two tracks have the same axis
plot Gviz
3.4 years ago 腾 • 0
0
votes
1
reply
1.2k
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
7.4 years ago • updated 7.0 years ago juan-pablo.cerapio-arroyo ▴ 10
0
votes
1
reply
1.5k
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 6.9 years ago by ★ 13k • written 6.9 years ago by • 0
2
votes
1
reply
929
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 6.8 years ago by ★ 2.0k • written 6.8 years ago by ▴ 90
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.6 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.0k
views
Plotting coverage from bam files
bam plot
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 40
0
votes
1
reply
2.9k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 5.6 years ago by ▴ 420 • written 5.6 years ago by • 0
0
votes
1
reply
1.3k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 5.4 years ago by ▴ 150 • written 5.4 years ago by • 0
0
votes
1
reply
862
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 5.4 years ago by 65k • written 5.4 years ago by ▴ 10
0
votes
1
reply
788
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 4.7 years ago by ★ 5.2k • written 4.7 years ago by • 0
0
votes
1
reply
1.0k
views
How to create a violin plot
plot ggcyte
updated 4.6 years ago by ★ 3.9k • written 4.6 years ago by • 0
0
votes
1
reply
765
views
part of the volcano plot does not appear.
plot volcano volcanoplot
updated 14 months ago by ▴ 780 • written 14 months ago by ▴ 10
1
vote
1
reply
1.5k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 50
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
8.8 years ago bruce.moran ▴ 30
0
votes
0
replies
638
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
2.5 years ago Abdou-samad • 0
0
votes
0
replies
1.0k
views
Plotting False discoveries vs genes selected
plot
7.8 years ago humberto_munoz • 0
0
votes
0
replies
996
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
6.6 years ago anupriyaverma1408 • 0
0
votes
0
replies
690
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.1 years ago raquelponti • 0
0
votes
0
replies
1.1k
views
changing the plot type in minet package
minet plot
8.1 years ago Angel ▴ 40
50 results • Page 1 of 1
Recent ...
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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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