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Plot
•
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11
votes
15
replies
1.7k
views
edgeR - MDS Plot for Count Data
edger
DEG
mds
plot
4.8 years ago • updated 4.7 years ago
baus87
• 0
0
votes
9
replies
348
views
Plotting change over time
deseq2
Plot
updated 2.1 years ago by
Michael Love
37k • written 2.1 years ago by
mpuli011
• 0
0
votes
6
replies
954
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 5.0 years ago by
vulegom
• 0 • written 5.3 years ago by
DataFanatic
• 0
2
votes
5
replies
1.0k
views
rlog, lfcShrink and vst on gene subset
deseq2
subsetting
plot
updated 4.0 years ago by
Michael Love
37k • written 4.0 years ago by
giulia.pasquesi
▴ 10
0
votes
5
replies
724
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind
plot
heatmap.3
updated 2.8 years ago by
Rory Stark
★ 4.4k • written 2.8 years ago by
researcher
• 0
0
votes
5
replies
1.3k
views
R plot error
r
bioconductor
graph
plot
data representation in graphical forms
7.0 years ago
megha.24may
• 0
0
votes
4
replies
2.1k
views
heatmap.2 like plot in ggplot
plot
updated 7.6 years ago by
James W. MacDonald
59k • written 7.6 years ago by
Georg Otto
▴ 120
2
votes
4
replies
783
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio
ggplot2
call
plot
updated 5.4 years ago by
Michael Lawrence
11k • written 5.4 years ago by
oswaldo.lorenzo
▴ 10
1
vote
3
replies
581
views
copy number variation analysis (CNV)
copynumber
plot
visualization
NGS
gene
updated 17 months ago by
Ram
▴ 150 • written 19 months ago by
sijing.gsj
• 0
2
votes
3
replies
1.1k
views
ggbio tracks() function handling x axis in the wrong way
ggbio
ggplot2
tracks
genomics
plot
5.7 years ago
oswaldo.lorenzo
▴ 10
0
votes
3
replies
712
views
Adding gene names which are differentially expressed in the plot
edgeR
plot
differential gene expression
4.6 years ago
fawazfebin
▴ 30
1
vote
3
replies
1.8k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2
ggbio
plot
tracks
bioconductor
updated 5.3 years ago by
Michael Lawrence
11k • written 5.3 years ago by
oswaldo.lorenzo
▴ 10
0
votes
3
replies
594
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind
plot
color
updated 2.3 years ago by
Rory Stark
★ 4.4k • written 2.5 years ago by
melnuesch
▴ 10
0
votes
2
replies
389
views
Can we control colors for two different colAtributes
diffbind
plot
plotHeatmap
updated 2.8 years ago by
Rory Stark
★ 4.4k • written 2.8 years ago by
researcher
• 0
0
votes
2
replies
322
views
Gene body coverage plot
plot
gene
GenomicRanges
Coverage
R
updated 7 weeks ago by
kent.riemondy
• 0 • written 10 weeks ago by
svenbioinf
• 0
1
vote
2
replies
1.3k
views
Manhattan plot from ChAMP data
champ
plot
manhattan plot
updated 5.2 years ago by
Yuan Tian
▴ 90 • written 5.2 years ago by
rasmus.rydbirk
▴ 10
1
vote
2
replies
1.1k
views
"confint" type in DataTrack function (Gviz)
Gviz
plot
confidence interval
updated 6.8 years ago by
florian.hahne@novartis.com
★ 1.6k • written 6.8 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
265
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
9 months ago
karlaarz
• 0
2
votes
2
replies
664
views
Change legend names when using plotBCV
edger
plot
Tutorial
updated 3.8 years ago by
Gordon Smyth
45k • written 3.8 years ago by
Juan
• 0
0
votes
2
replies
3.2k
views
Plots and Heat Maps not displaying in RGui Window
plot
heatmap
graphical
rnaseqgene
deseqdataset
7.1 years ago
greg.mulhearn
• 0
2
votes
2
replies
1.2k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz
Plot
NA
graph
Job
updated 6.8 years ago by
James W. MacDonald
59k • written 6.8 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.0k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper
DESeq2
plot
updated 15 months ago by
ATpoint
★ 1.2k • written 15 months ago by
Sowbhagyalakshmi
• 0
1
vote
2
replies
547
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 2.6 years ago by
kevin.rue
▴ 300 • written 2.6 years ago by
Antonio Campos
• 0
0
votes
2
replies
346
views
Correlation plot how to improve?
plot
correlation
2.6 years ago
annkolman78
• 0
2
votes
2
replies
370
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind
plot
venn diagram
updated 19 months ago by
Rory Stark
★ 4.4k • written 19 months ago by
jiekwo1
• 0
2
votes
2
replies
861
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot
ggplot2
updated 5.9 years ago by
WouterDeCoster
▴ 130 • written 5.9 years ago by
clairelsimpson
▴ 10
1
vote
2
replies
778
views
clusterporfiler enrichGO plot
clusterprofiler
gene ontology
plot
updated 20 months ago by
793345316
▴ 40 • written 20 months ago by
kagan.ferenc
• 0
0
votes
1
reply
278
views
two tracks have the same axis
plot
Gviz
18 months ago
腾
• 0
0
votes
1
reply
773
views
lumi: can't see sample corr pairwise and MAplot plots
lumi
plot
updated 7.3 years ago by
Gordon Smyth
45k • written 7.3 years ago by
Frederico Moraes Ferreira
▴ 100
0
votes
1
reply
3.8k
views
flowPeaks - plot.new() error due to too many graphs in one R Graphics window
flowpeaks
plot
updated 7.3 years ago by
James W. MacDonald
59k • written 7.3 years ago by
AJC
▴ 10
1
vote
1
reply
992
views
ggplot same data, different plots
ggplot2
ggplot
plot
updated 6.3 years ago by
James W. MacDonald
59k • written 6.3 years ago by
alptaciroglu
▴ 50
4
votes
1
reply
1.5k
views
gviz: add horizontal line to DataTrack object
bioconductor
gviz
plot
horizontal line
updated 5.9 years ago by
florian.hahne@novartis.com
★ 1.6k • written 5.9 years ago by
silvia.parolo
▴ 10
1
vote
1
reply
1.0k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio
ggplot2
genomics
plot
5.7 years ago
oswaldo.lorenzo
▴ 10
0
votes
1
reply
799
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus
calcICL
plot
5.5 years ago • updated 5.0 years ago
juan-pablo.cerapio-arroyo
▴ 10
0
votes
1
reply
868
views
Save multiple plots into single pdf from Deseq2 analysis?
plot
pdf
dev.off
updated 4.9 years ago by
Wolfgang Huber
13k • written 4.9 years ago by
Bio_Ram
• 0
2
votes
1
reply
551
views
Plotting Gene Expression Data From Multiple Batches
batch effect
microarray
plot
updated 4.9 years ago by
Jenny Drnevich
★ 2.0k • written 4.9 years ago by
tcalvo
▴ 70
0
votes
1
reply
1.1k
views
Plotting coverage from bam files
bam
plot
updated 4.1 years ago by
James W. MacDonald
59k • written 4.1 years ago by
gv
▴ 40
0
votes
1
reply
2.0k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R
ROC
mean
plot
multiple roc curves
updated 3.7 years ago by
chris86
▴ 400 • written 3.7 years ago by
sap940
• 0
0
votes
1
reply
637
views
SC3 how to customize plots ?
SC3
plot
consensus
marker
heatmap
updated 3.4 years ago by
Vladimir Kiselev
▴ 150 • written 3.5 years ago by
shaktirielland
• 0
0
votes
1
reply
452
views
plot get overridden rather to overlapped
rsamtools
ggplot2
plot
updated 3.5 years ago by
James W. MacDonald
59k • written 3.5 years ago by
mictadlo
• 0
0
votes
1
reply
355
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind
plot
plotHeatmap
dba.plotHeatmap
updated 2.7 years ago by
Rory Stark
★ 4.4k • written 2.7 years ago by
researcher
• 0
0
votes
1
reply
378
views
How to create a violin plot
plot
ggcyte
updated 2.6 years ago by
Kevin Blighe
3.5k • written 2.6 years ago by
vasildmb
• 0
0
votes
1
reply
331
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP
R
Bioconductor
Plot
updated 18 months ago by
shepherl
3.1k • written 18 months ago by
tpm
• 0
0
votes
1
reply
899
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
6.9 years ago
bruce.moran
▴ 30
0
votes
0
replies
96
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage
plot
RNASeq
goseq
updated 10 weeks ago by
Michael Love
37k • written 10 weeks ago by
m.glymenaki
• 0
0
votes
0
replies
726
views
GenomeGraphs, modify Y axis
genomegraphs
biomart
plot
graphics
6.7 years ago
koenhendriks89
• 0
0
votes
0
replies
574
views
Plotting False discoveries vs genes selected
plot
5.8 years ago
humberto_munoz
• 0
0
votes
0
replies
219
views
Problem with Plots or Graphics Device in the RStudio
NullDevice
plot
R
7 months ago
Abdou-samad
• 0
0
votes
0
replies
227
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
13 months ago
ginlucks
• 0
0
votes
0
replies
687
views
changing the plot type in minet package
minet
plot
6.1 years ago
Angel
▴ 40
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Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue
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shepherl
3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Answer: Package name already exists due to previous issue
by
James W. MacDonald
59k
You should probably send this question to bioc-devel@r-project.org
Comment: edgeR - how to convert DGELRT and other classes to .csv files
by
Benjamin
• 0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
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59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent. ``` > txdb <- m…
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Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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