Showing : RStudio • reset
0
votes
20
replies
6.1k
views
SummarizeOverlaps in R
summarizeoverlaps Bam rstudio
updated 8.8 years ago by ▴ 90 • written 8.8 years ago by ▴ 10
2
votes
18
replies
3.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 9.0 years ago by ★ 28k • written 9.0 years ago by • 0
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
0
votes
14
replies
4.1k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 19 months ago by • 0 • written 22 months ago by • 0
9
votes
11
replies
5.8k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 7 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
0
votes
9
replies
2.4k
views
is AClust package still available?
Aclust Aclustering Rstudio Clusters
updated 8.7 years ago by ▴ 40 • written 8.8 years ago by ▴ 10
3
votes
8
replies
26k
views
"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade Rstudio Bioconductor R3.2.2
8.5 years ago svlachavas ▴ 830
0
votes
8
replies
335
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 9 days ago by ★ 1.3k • written 10 days ago by • 0
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
1
vote
7
replies
2.9k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.1 years ago • updated 3.0 years ago Abby ▴ 10
3
votes
7
replies
4.6k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
0
votes
7
replies
1.6k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 6 months ago by • 0
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
0
votes
5
replies
2.9k
views
New Version of CummeRbund?
cummerbund rstudio
8.3 years ago lreiter • 0
2
votes
5
replies
5.5k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 830
0
votes
5
replies
1.6k
views
Using RStudio AMI with localhost
RStudio AWS AMI
4.8 years ago bio-explorer • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by • 0
1
vote
5
replies
4.0k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw rtracklayer http RStudio
updated 3.4 years ago by ★ 11k • written 3.4 years ago by • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.6 years ago Sonia • 0
4
votes
5
replies
2.1k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 2.0 years ago by • 0
2
votes
5
replies
794
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago • updated 5 months ago j_denton • 0
2
votes
4
replies
1.7k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 7.0 years ago by ▴ 650 • written 7.0 years ago by • 0
0
votes
4
replies
1.4k
views
problem in installing flowclust
rstudio flowclust
updated 6.9 years ago by 3.9k • written 6.9 years ago by • 0
0
votes
4
replies
2.8k
views
Unable to install Rcpp package for genefo
Rcpp genefo linux linux mint Rstudio
updated 7.8 years ago by • 0 • written 7.8 years ago by • 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
1
vote
4
replies
1.6k
views
biomaRt scan error for latest assembly when indicating version Number
biomart rstudio ensembl mart
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by • 0
2
votes
4
replies
1.3k
views
R session terminates when trying to load affycoretools package
affycoretools Rstudio fatal error
updated 6.2 years ago by 65k • written 6.2 years ago by ▴ 10
2
votes
4
replies
1.7k
views
make TxDb from list of genes
R maketxdbfrombiomart maketxdbfromgranges rstudio ensembl
updated 12 months ago by ▴ 10 • written 5.4 years ago by • 0
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq geneLenDataBase bioclite rstudio
updated 8.5 years ago by 25k • written 8.5 years ago by ▴ 10
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
7.6 years ago Jon Bråte ▴ 250
2
votes
3
replies
500
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
5 months ago R_Page • 0
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.3 years ago by ▴ 10
1
vote
3
replies
3.5k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 10
0
votes
3
replies
1.1k
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 9.0 years ago by ★ 8.2k • written 9.0 years ago by ▴ 10
1
vote
3
replies
23k
views
Converting first column to rownames
rstudio
8.2 years ago John ▴ 30
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 8.8 years ago by 41k • written 8.8 years ago by ▴ 10
0
votes
3
replies
1.3k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures rversion3.2.1 3.0 rstudio
8.6 years ago serpalma.v ▴ 60
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago mszskb • 0
1
vote
3
replies
464
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
3
replies
1.1k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 9.1 years ago by 65k • written 9.1 years ago by • 0
0
votes
2
replies
1.2k
views
Error viewing the data set Golub_Merge
golubEsets rstudio
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
1
vote
2
replies
1.3k
views
Rstudio session aborts when using read.celfiles()
oligo package Rstudio fatal error microarray CEL
6.5 years ago biostR ▴ 10
0
votes
2
replies
364
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
5 months ago yee • 0
0
votes
2
replies
1.8k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation variantannotation rstudio
updated 8.2 years ago by ★ 6.8k • written 8.2 years ago by • 0
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
6.5 years ago clarisbaby • 0
0
votes
2
replies
1.1k
views
Problem with cummeRbund
rstudio cummerbund
7.2 years ago • updated 7.1 years ago sanathoi.guru • 0
0
votes
2
replies
1.2k
views
Usinig BiocParallel package in R with M1 MAC
RStudio R M1 BiocParallel Mac
updated 16 months ago by • 0 • written 18 months ago by • 0
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
reply
2.3k
views
Upload error in RStudio running on Amazon - AMI
AMI RStudio upload error custom install
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
France, 2 minutes ago
EMBL Heidelberg, 19 minutes ago
The city by the bay, 46 minutes ago
WEHI, Melbourne, Australia, 57 minutes ago
Iran, 1 hour ago
Traffic: 535 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6