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Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
19 months ago Andy Lynch ▴ 120
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640
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multipollutant models
statistics Regression r limma
22 months ago Jitendra ▴ 10
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1
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814
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 22 months ago by 43k • written 22 months ago by • 0
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736
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Further analysis after limma regression output
statistics Epigenetics limma
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 10
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3.1k
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 2.5 years ago by ★ 5.0k • written 2.5 years ago by ▴ 10
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3
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2.0k
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batch effect in EPIC array data
statistics Epigenetics R
updated 2.6 years ago by ▴ 760 • written 2.6 years ago by ▴ 10
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1.0k
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
2.8 years ago alena.vanboemmel • 0
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2
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1.2k
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.8 years ago by ★ 1.4k • written 2.8 years ago by • 0
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1.1k
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
3.2 years ago arisarkar88 ▴ 40
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1.2k
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
3.2 years ago Andy Lynch ▴ 120
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1.3k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
3.2 years ago Andy Lynch ▴ 120
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6
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2.0k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
3.4 years ago Jitendra ▴ 10
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3
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2.1k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 3.6 years ago by 21k • written 3.7 years ago by ▴ 10
3
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5
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1.8k
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P adjusted values in Deseq2
DESeq2 Statistics
written 4.7 years ago by • 0
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2
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1.5k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
4.0 years ago • updated 2.7 years ago Wolfgang Huber ★ 13k
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1.5k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
4.6 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
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1.3k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
4.6 years ago m.jackson • 0
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.8 years ago António Miguel de Jesus Domingues ▴ 510
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.8 years ago Laura • 0
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1.2k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.9 years ago • updated 4.6 years ago Luo Weijun ★ 1.6k
1
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2
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1.6k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 60
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1.2k
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
5.1 years ago Johannes Rainer ★ 2.1k
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
5.2 years ago • updated 4.9 years ago whduke • 0
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2.3k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
7.3 years ago • updated 4.9 years ago Luo Weijun ★ 1.6k
1
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0
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1.3k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
5.4 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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3.0k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.9 years ago • updated 5.8 years ago Gordon Smyth 53k
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1.6k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
6.7 years ago • updated 5.9 years ago Luo Weijun ★ 1.6k
0
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1.2k
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.9 years ago A • 0
0
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1
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1.1k
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
2
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2
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4.4k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 6.0 years ago by 53k • written 6.0 years ago by ▴ 10
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0
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1.4k
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
6.1 years ago tatabox • 0
3
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3
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2.1k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 6.4 years ago by 43k • written 6.4 years ago by • 0
0
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1
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1.3k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.7 years ago naglemi ▴ 10
0
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0
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1.1k
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package for mismatch distribution?
genetics statistics
6.7 years ago myriam.croze07 • 0
1
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6
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3.6k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 2.6 years ago by 43k • written 6.8 years ago by • 0
1
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2
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1.3k
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Newbie to all of this
bioconductor statistics
7.0 years ago sportwoo • 0
8
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8
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8.8k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 7.1 years ago by ★ 7.9k • written 7.1 years ago by ▴ 60
1
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2
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1.4k
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
1
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4
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1.7k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
7.1 years ago Andrea Carenzo • 0
0
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2
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1.5k
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comparing two GOstats result lists
gostats statistics
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 30
1
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0
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1.6k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
7.5 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
replies
1.6k
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
7.5 years ago floriandeckert ▴ 30
0
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0
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1.5k
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
7.5 years ago kieranrcampbell ▴ 50
0
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0
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1.6k
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Two questions about pathifier package
pathways statistics microarray
7.8 years ago arronar • 0
28
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7
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14k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 2.0 years ago by ▴ 10 • written 8.0 years ago by ▴ 40
2
votes
4
replies
1.7k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 8.0 years ago by ★ 13k • written 8.0 years ago by ▴ 90
0
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0
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1.5k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
8.0 years ago rbronste ▴ 60
0
votes
0
replies
1.9k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.7 years ago • updated 8.5 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
2.4k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 8.6 years ago by • 0 • written 10.6 years ago by ▴ 80
0
votes
0
replies
1.6k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
8.6 years ago radel • 0
71 results • Page 1 of 2
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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