Showing : STATISTICS • reset
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 10 days ago by • 0 • written 7.9 years ago by • 0
0
votes
0
replies
198
views
Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
11 weeks ago Andy Lynch ▴ 120
0
votes
0
replies
238
views
multipollutant models
statistics Regression r limma
5 months ago Jitendra ▴ 10
0
votes
1
reply
333
views
DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 5 months ago by 42k • written 5 months ago by • 0
25
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 7 months ago by ▴ 10 • written 6.6 years ago by ▴ 30
1
vote
1
reply
369
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
1
vote
1
reply
1.3k
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 13 months ago by ★ 4.1k • written 13 months ago by • 0
1
vote
6
replies
2.8k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 14 months ago by 42k • written 5.4 years ago by • 0
0
votes
3
replies
966
views
batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
0
votes
2
replies
1.0k
views
News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.6 years ago • updated 15 months ago Wolfgang Huber ★ 13k
0
votes
0
replies
671
views
Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
16 months ago alena.vanboemmel • 0
0
votes
2
replies
699
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 17 months ago by ★ 1.4k • written 17 months ago by • 0
1
vote
0
replies
649
views
Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
21 months ago arisarkar88 ▴ 40
1
vote
0
replies
781
views
Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
21 months ago Andy Lynch ▴ 120
1
vote
0
replies
769
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
0
votes
6
replies
1.3k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
0
votes
3
replies
1.5k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.2 years ago by 21k • written 2.3 years ago by ▴ 10
3
votes
5
replies
1.4k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 3.3 years ago by • 0
0
votes
0
replies
923
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.1 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
926
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.5 years ago • updated 3.1 years ago Luo Weijun ★ 1.6k
10
votes
14
replies
13k
views
how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 3.2 years ago by ▴ 20 • written 8.2 years ago by ▴ 30
0
votes
0
replies
948
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.2 years ago m.jackson • 0
0
votes
0
replies
907
views
Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
3.3 years ago António Miguel de Jesus Domingues ▴ 510
0
votes
0
replies
1.1k
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
3.4 years ago Laura • 0
0
votes
0
replies
1.9k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.8 years ago • updated 3.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
770
views
Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.8 years ago • updated 3.5 years ago whduke • 0
1
vote
2
replies
1.1k
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.6 years ago by 42k • written 3.6 years ago by ▴ 60
2
votes
0
replies
860
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.6 years ago Johannes Rainer ★ 2.0k
1
vote
0
replies
900
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.0 years ago Fred Hutch (Recruiting) ▴ 40
3
votes
0
replies
2.2k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.5 years ago • updated 4.4 years ago Gordon Smyth 50k
0
votes
0
replies
1.3k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.3 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
790
views
How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.5 years ago A • 0
0
votes
1
reply
766
views
Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
2
votes
2
replies
2.9k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.6 years ago by 50k • written 4.6 years ago by ▴ 10
0
votes
0
replies
1.0k
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.7 years ago tatabox • 0
3
votes
3
replies
1.4k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.9 years ago by 42k • written 4.9 years ago by • 0
0
votes
1
reply
984
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.3 years ago naglemi ▴ 10
0
votes
0
replies
773
views
package for mismatch distribution?
genetics statistics
5.3 years ago myriam.croze07 • 0
1
vote
2
replies
944
views
Newbie to all of this
bioconductor statistics
5.6 years ago sportwoo • 0
8
votes
8
replies
6.8k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.6 years ago by ★ 7.9k • written 5.6 years ago by ▴ 60
1
vote
2
replies
969
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.7 years ago Andrea Carenzo • 0
0
votes
2
replies
1.1k
views
comparing two GOstats result lists
gostats statistics
updated 5.9 years ago by 65k • written 5.9 years ago by ▴ 20
1
vote
0
replies
1.2k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.0 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.1 years ago floriandeckert ▴ 30
0
votes
0
replies
1.1k
views
News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.1 years ago kieranrcampbell ▴ 50
0
votes
0
replies
1.2k
views
Two questions about pathifier package
pathways statistics microarray
6.3 years ago arronar • 0
2
votes
4
replies
1.2k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.6 years ago by ★ 13k • written 6.6 years ago by ▴ 90
0
votes
0
replies
1.2k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.6 years ago rbronste ▴ 60
0
votes
0
replies
1.6k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.2 years ago • updated 7.1 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
Recent ...
Replies
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Awards • All
Popular Question to maria.soler • 0
Popular Question to Pietro ▴ 40
Popular Question to neilzhao ▴ 30
Popular Question to ATpoint ★ 4.1k
Teacher to Michael Love 42k
Locations • All
France, just now
UPF, Barcelona, Spain, 1 hour ago
Canada, 2 hours ago
WEHI, Melbourne, Australia, 2 hours ago
San Diego, 3 hours ago
Traffic: 621 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6