Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
go.db
•
reset
2
votes
6
replies
4.7k
views
DiffBind installation doesn't work
diffbind
go.db
9.7 years ago • updated 9.6 years ago
Gary
▴ 20
0
votes
3
replies
1.7k
views
GO.db installation error
GO
go.db
8.3 years ago
cananhas
• 0
0
votes
5
replies
1.8k
views
hyperGTest not working on custom annotation package
GOstats
AnnotationDbi
GO.db
updated 5.9 years ago by
James W. MacDonald
67k • written 5.9 years ago by
lucas.michel
• 0
4
votes
2
replies
2.3k
views
mapIds to get GO terms
annotationdbi
go.db
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
sisterdot
▴ 10
2
votes
2
replies
1.6k
views
GO.db source obo file?
gene ontology
gostats
go.db
ontologies
updated 6.5 years ago by
Martin Morgan
25k • written 6.5 years ago by
brismiller
• 0
0
votes
3
replies
4.6k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor
R
go.db
annotationdbi
dependency
7.9 years ago
Sidi.Ma
• 0
1
vote
10
replies
3.1k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.8 years ago by
James W. MacDonald
67k • written 7.8 years ago by
Angela
• 0
0
votes
3
replies
1.4k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db
annotate
6.9 years ago
dusan.petrovic
• 0
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 6.4 years ago by
apkmirrorproject
• 0 • written 6.4 years ago by
marcinjoachimiak
▴ 10
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db
WGCNA
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
s3462450
▴ 10
0
votes
1
reply
1.8k
views
GO.db, pfma.db, KEGG.db
pfam
go.db
kegg.db
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
josefina.lascanomaillard
• 0
2
votes
17
replies
2.6k
views
Problem installing package, version of dependency issue
AnnotationDbi
GO.db
updated 12 months ago by
Lluís Revilla Sancho
▴ 760 • written 12 months ago by
alexandre.blais
▴ 50
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 4.5 years ago by
James W. MacDonald
67k • written 4.5 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.9k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
adrianna-christina
▴ 10
0
votes
1
reply
1.4k
views
GO.db/GOSim bugged or my bad?
go.db
software error
bug
updated 9.7 years ago by
Hervé Pagès
16k • written 9.7 years ago by
lejeczek
▴ 10
4
votes
2
replies
4.0k
views
Cannot load or update GO.db
GO.db
bioclite
9.7 years ago
Steve Pederson
▴ 170
0
votes
1
reply
1.4k
views
Gene Ontolology and Annotation
Gene Ontolology
Annotation
GO.db
org.Sc.sgd.db
org.Hs.eg.db
updated 9.1 years ago by
Diego Diez
▴ 760 • written 9.1 years ago by
msp.cse
• 0
1
vote
2
replies
2.8k
views
Installation Error- GO.db
GO.db
updated 8.6 years ago by
James W. MacDonald
67k • written 8.6 years ago by
cpotter710
▴ 10
1
vote
1
reply
1.9k
views
How to install old version of GO.db in R
GO.db
R
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
animesh_10kuet
• 0
1
vote
5
replies
5.8k
views
can not able to install go.db
go.db
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
jarraya.amina.fst
• 0
1
vote
2
replies
1.9k
views
Help installing clusterProfiler
clusterProfiler
DO.db
GO.db
lazy load fail
updated 4.7 years ago by
James W. MacDonald
67k • written 4.7 years ago by
masaver
• 0
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db
topGO
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
fklirono
• 0
1
vote
1
reply
1.7k
views
installing GO.bd for WGCNA
GO.db
WGCNA
updated 4.1 years ago by
James W. MacDonald
67k • written 4.1 years ago by
VictoriaL
• 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO
GO.db
3.7 years ago
decppced
• 0
3
votes
2
replies
2.5k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db
AnnotationDbi
updated 4.0 years ago by
Martin Morgan
25k • written 4.0 years ago by
Guido Hooiveld
★ 4.1k
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.9 years ago by
Basti
▴ 780 • written 3.9 years ago by
MOHAMMAD
• 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.9 years ago
MOHAMMAD
• 0
0
votes
1
reply
2.1k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
veerle
• 0
1
vote
6
replies
2.5k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db
AnnotationDbi
updated 3.4 years ago by
Jacky
• 0 • written 3.4 years ago by
Guandong Shang
▴ 40
0
votes
2
replies
2.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.2 years ago
Chruut
• 0
2
votes
1
reply
3.0k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler
GO.db
2.6 years ago
Lucía
▴ 30
0
votes
8
replies
1.3k
views
GOslim missing GO term
GO.db
GOslim
14 months ago • updated 13 months ago
amanda
• 0
1
vote
6
replies
1.5k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db
versioning
updated 3.0 years ago by
James W. MacDonald
67k • written 3.0 years ago by
rebeliscu
• 0
0
votes
1
reply
667
views
Which species does GO.db use
GO.db
annotationTools
updated 18 months ago by
Lluís Revilla Sancho
▴ 760 • written 18 months ago by
youngleel
• 0
2
votes
5
replies
636
views
How to retrieve gene ontology GO class from gene list?
GO.db
goTools
updated 9 months ago by
James W. MacDonald
67k • written 9 months ago by
bandconductor
• 0
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 6.8 years ago by
Ou, Jianhong
★ 1.3k • written 6.9 years ago by
n.pantelireis16
• 0
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
karl.stamm
▴ 10
2
votes
2
replies
1.1k
views
Troubles installing GO.db
go.db
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Aurora
▴ 20
1
vote
1
reply
1.3k
views
GO.db: searching for "top" GO term for list of terms
GO
go.db
updated 6.4 years ago by
James W. MacDonald
67k • written 6.4 years ago by
TB18
• 0
1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db
clusterprofiler
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
Leonardo Collado Torres
★ 1.1k
2
votes
5
replies
1.2k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db
annota
org.Hs.eg.
GO.db
updated 5.6 years ago by
James W. MacDonald
67k • written 5.6 years ago by
brunogiotti
• 0
0
votes
5
replies
4.8k
views
Cannot install GO.db for R 3.6.1
GO.db
R 3.6.1
source package
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Quinten
• 0
0
votes
1
reply
1.3k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db
hgu95av2.db
R3.6.0
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
sarahqd
• 0
1
vote
4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.0 years ago by
James W. MacDonald
67k • written 5.0 years ago by
C A
• 0
3
votes
2
replies
1.0k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.7 years ago by
James W. MacDonald
67k • written 4.7 years ago by
max.neal
▴ 10
0
votes
4
replies
1.7k
views
Error attaching TIN
software error
GO.db
TIN
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
AB3
• 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error
go.db
7.0 years ago
matt.a.bennett25890
• 0
0
votes
0
replies
1.4k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats
go.db
6.9 years ago
crafy
• 0
0
votes
0
replies
616
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
20 months ago
RuBBiT0
▴ 10
1
vote
0
replies
569
views
Typo in GO.db manual reference
GO.db
21 months ago
RuBBiT0
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Comment: Recount3 data correspond to TCGA data
by
Leonardo Collado Torres
★ 1.1k
Thanks @fep29! ^^
Votes
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Awards
• All
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Popular Question
to
Martin Morgan
25k
Popular Question
to
Guido Hooiveld
★ 4.1k
Locations
• All
Canada,
1 minute ago
Pittsburgh, United States,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
Barcelona/Universitat Pompeu Fabra,
2 hours ago
United States,
2 hours ago
Traffic: 643 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6