Showing : pathways • reset
1
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4
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pathview - multiple states
pathview Pathways KEGG
14 months ago Philippine • 0
3
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1
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2.5k
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Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 19 months ago by ★ 4.1k • written 19 months ago by ▴ 10
1
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9
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4.0k
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Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 19 months ago by 68k • written 20 months ago by ▴ 10
2
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4
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2.7k
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How many of my genes from my gene list are in each KEGG pathway?
Pathways clusterProfiler gseKEGG KEGG
written 22 months ago by • 0
0
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11
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3.1k
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globaltest question
Pathways probe affy Pathways probe affy
written 19.4 years ago by ▴ 30
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0
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1.0k
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Job: Postdoc for computational biology on cancer omics data analysis at Liang lab of Wistar Institute, Philadelphia, US
omics cancerdata Pathways
2.1 years ago omicsresearch • 0
0
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1
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1.0k
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
2.8 years ago Grace • 0
0
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0
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1000
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Changing pathway names in pathway analysis
pathways Pathways
3.0 years ago Katharina • 0
0
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0
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1.1k
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
3.2 years ago whduke • 0
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0
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1.2k
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Pathway Analysis using GAGE
gage RNASeq gageData Pathways
3.8 years ago OST • 0
1
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2
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1.5k
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Pathway analysis of RNAseq data using goseq package
Pathways goseq RNASeqData
3.9 years ago m.glymenaki • 0
0
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6
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7.4k
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extracting the KEGG pathway for a set of genes
Pathways KEGG
4.5 years ago Bogdan ▴ 670
0
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5
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8.0k
views
Pheatmap/Complexheatmap: making a continuous color scale with NAs
R Pathways pheatmap limma
written 4.9 years ago by ▴ 10
1
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1
reply
1.8k
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News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
4.9 years ago Luo Weijun ★ 1.6k
2
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0
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1.6k
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Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
5.0 years ago Ben ▴ 50
2
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2
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1.7k
views
Pathway analysis and GO terms analysis with goseq
KEGG Pathways GO goseq
updated 5.2 years ago by 68k • written 5.2 years ago by • 0
2
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1
reply
3.7k
views
pre-filtering gene sets for GSVA/ssGSEA
gsea ssgsea gsva pathways
updated 5.6 years ago by ★ 3.4k • written 5.6 years ago by ▴ 50
0
votes
1
reply
2.9k
views
KEGGREST keggGet fails to retrieve modules, but not pathways
keggrest software error pathways modules kegg
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
4
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1.8k
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Fonction of genes/metabolites in a pathway?
gene metabolite functionnal annotation pathways
updated 5.9 years ago by ★ 4.0k • written 5.9 years ago by • 0
0
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0
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1.3k
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plotting Signalling Pathways using SPIA
SPIA functional-analysis Pathways KEGG
5.9 years ago Assa Yeroslaviz ★ 1.5k
2
votes
2
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1.5k
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Help for Research Proposal
drug development pathways bioinformatics
updated 7.2 years ago by ★ 13k • written 7.2 years ago by • 0
0
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0
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1.4k
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Pathview input error: non-numeric variable in data frame
pathview kegg pathways package
7.3 years ago anc.informatics • 0
0
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0
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936
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Interactive metabolic pathway
pathways
7.5 years ago pritim2k6 • 0
0
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1
reply
1.6k
views
Protein pathway analysis -- Classify, organize, and cluster a list of proteins / discovering relations between a set of proteins and linking them to …
protein disease pathway analysis pathways
7.5 years ago ረ • 0
0
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0
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1.2k
views
Could not find pathways in HSA gmt
pathways gmt
7.7 years ago flalix • 0
0
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5
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7.7k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 3.3 years ago by • 0 • written 7.7 years ago by ▴ 20
2
votes
4
replies
3.3k
views
ReactomePA / Reactome: Extraction of genes within a term
pathways reactomepa functional annotation
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by • 0
0
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0
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1.5k
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Pathview web - unable to map transcriptomic data
pathways high-throughput transcriptomics nonmodel species
7.8 years ago monteiro • 0
0
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0
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1.4k
views
igraph PoTRA error
graph pathways igraph
7.9 years ago genomic8328 ▴ 10
2
votes
1
reply
2.5k
views
Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
updated 8.0 years ago by • 0 • written 12.3 years ago by ★ 1.6k
0
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0
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1.6k
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Two questions about pathifier package
pathways statistics microarray
8.1 years ago arronar • 0
1
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0
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2.0k
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Job: Bioinformatician/Computational Biologist - Dublin City, Ireland
bioinformatician job computational biology genomes pathways machine learning Job
8.3 years ago bulfin.triona ▴ 10
0
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1
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2.6k
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GAGE or GSEABase using expression data and pathway.gmt file for mouse
R GSEA GAGE pathways
updated 8.8 years ago by ★ 1.6k • written 8.8 years ago by • 0
0
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1
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2.9k
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Pathview: visualization of data
pathways
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by • 0
0
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0
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1.7k
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Pathway analysis for diffrential express gene
pathways gage annotation gostats
8.9 years ago avinash gupta ▴ 130
0
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0
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1.8k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job phd R pathways Job
9.1 years ago Frank Kramer ▴ 60
0
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6
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2.2k
views
Is reactome.db still updated?
reactome.db annotation pathways
9.3 years ago Guido Hooiveld ★ 4.1k
0
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4
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2.7k
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EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gsea egsea gage
updated 9.4 years ago by ▴ 40 • written 9.4 years ago by • 0
2
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0
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1.8k
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Job: PhD student positions in the areas of Bioinformatics, Computer Science and Biostatistics
bioinformatician job job phd R pathways Job
9.4 years ago Frank Kramer ▴ 60
0
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2
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3.4k
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WGCNA - Using real data for tutorial III
pathways wgcna network rna-seq
10.1 years ago hywel.williams • 0
2
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3
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6.0k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 4.5 years ago by • 0 • written 10.1 years ago by ▴ 20
2
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1
reply
1.5k
views
Problem with data not found using pathview package
pathways
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
8
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14
replies
5.4k
views
reactome.db is not updated?
genesetenrichment pathways reactome.db
updated 10.8 years ago by ▴ 150 • written 11.2 years ago by ★ 1.2k
1
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15
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5.0k
views
reactome.db: reactome IDs not mapped to pathway names
annotation pathways
updated 10.8 years ago by ▴ 150 • written 11.3 years ago by ★ 2.1k
0
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2
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2.4k
views
retrieve kegg pathway abundances from gage analysis
gage pathways kegg
updated 10.9 years ago by ★ 1.6k • written 10.9 years ago by ▴ 100
0
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13
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7.4k
views
gage pathways enrichment analysis
gage pathways kegg
updated 11.2 years ago by ★ 1.6k • written 11.2 years ago by ▴ 100
0
votes
2
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5.5k
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Pathway enrichment in bacteria metagenomes
pathways metagenomics
updated 11.2 years ago by ★ 1.6k • written 11.2 years ago by ▴ 100
0
votes
0
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2.7k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.4 years ago Luo Weijun ★ 1.6k
0
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0
replies
2.1k
views
Gostats Hypergeometric tests for non model organisms Kegg pathway
Pathways GO Organism GOstats
11.4 years ago Guest User ★ 13k
0
votes
0
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1.9k
views
Error in keggPathwayGraphs when updateCache = TRUE
Pathways ROntoTools Pathways ROntoTools
11.5 years ago Guest User ★ 13k
246 results • Page 1 of 5
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Votes
Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
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