Showing : plot • reset
0
votes
1
reply
1.2k
views
part of the volcano plot does not appear.
plot volcano volcanoplot
updated 23 months ago by ▴ 780 • written 23 months ago by ▴ 10
0
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0
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644
views
maSigPro visualizing individually each plot from each cluster
plot maSigPro Clustering
2.4 years ago oseias.rf.junior • 0
0
votes
2
replies
4.9k
views
Gene body coverage plot
plot gene GenomicRanges Coverage R
updated 2.8 years ago by ▴ 20 • written 2.9 years ago by • 0
0
votes
0
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982
views
Gage pathway analysis of RNAseq graphical representation as dot plot
gage plot RNASeq goseq
updated 2.9 years ago by 43k • written 2.9 years ago by • 0
0
votes
0
replies
879
views
Problem with Plots or Graphics Device in the RStudio
NullDevice plot R
3.3 years ago Abdou-samad • 0
0
votes
4
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1.6k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 2.0 years ago by 67k • written 3.5 years ago by • 0
0
votes
0
replies
854
views
Gviz: set colors for UTRs
plot color Gviz utr
3.8 years ago ginlucks • 0
0
votes
2
replies
4.2k
views
Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘plotPCA’ for signature ‘"prcomp"’
plotGrouper DESeq2 plot
updated 4.0 years ago by ★ 4.6k • written 4.0 years ago by • 0
0
votes
1
reply
934
views
two tracks have the same axis
plot Gviz
4.2 years ago 腾 • 0
0
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1
reply
992
views
I am using the DEP package example dataset, and I am getting this error on: plot_frequency(data_se)
DEP R Bioconductor Plot
updated 4.2 years ago by 4.1k • written 4.2 years ago by • 0
1
vote
3
replies
2.2k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 4.1 years ago by ▴ 220 • written 4.3 years ago by • 0
2
votes
2
replies
1.3k
views
[dba.plotvenn] Can I move around the numbers in the diagram so that they fit inside the overlapped region?
diffbind plot venn diagram
updated 4.3 years ago by ★ 5.2k • written 4.3 years ago by • 0
2
votes
2
replies
2.3k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 4.4 years ago by ▴ 50 • written 4.4 years ago by • 0
0
votes
9
replies
1.6k
views
Plotting change over time
deseq2 Plot
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
0
votes
0
replies
878
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.8 years ago raquelponti • 0
0
votes
3
replies
1.9k
views
Change color of Diffbind's PCA and clustered heatmap plot()
DiffBind plot color
updated 5.0 years ago by ★ 5.2k • written 5.2 years ago by ▴ 10
0
votes
2
replies
1.1k
views
Correlation plot how to improve?
plot correlation
5.3 years ago annkolman78 • 0
1
vote
2
replies
1.5k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress heatmap gene ontology plot
updated 5.3 years ago by ▴ 350 • written 5.3 years ago by • 0
0
votes
1
reply
1.2k
views
How to create a violin plot
plot ggcyte
updated 5.3 years ago by ★ 4.0k • written 5.3 years ago by • 0
0
votes
1
reply
984
views
Can we change the name of the ColAttributes in the image generated by dba.plotHeatmap?
DiffBind plot plotHeatmap dba.plotHeatmap
updated 5.4 years ago by ★ 5.2k • written 5.4 years ago by • 0
0
votes
2
replies
1.2k
views
Can we control colors for two different colAtributes
diffbind plot plotHeatmap
updated 5.4 years ago by ★ 5.2k • written 5.4 years ago by • 0
0
votes
5
replies
3.8k
views
How can I remove the row and column labels/names in the plot() or dba.plotHeatmap() while plotting correlation matrix using diffbind?
Diffbind plot heatmap.3
updated 5.4 years ago by ★ 5.2k • written 5.4 years ago by • 0
0
votes
1
reply
1.6k
views
SC3 how to customize plots ?
SC3 plot consensus marker heatmap
updated 6.1 years ago by ▴ 150 • written 6.2 years ago by • 0
0
votes
1
reply
1.0k
views
plot get overridden rather to overlapped
rsamtools ggplot2 plot
updated 6.1 years ago by 67k • written 6.1 years ago by ▴ 10
0
votes
1
reply
3.2k
views
How can I create a mean ROC curve for multiple plotted ROC curves, R
R ROC mean plot multiple roc curves
updated 6.3 years ago by ▴ 420 • written 6.3 years ago by • 0
2
votes
2
replies
1.5k
views
Change legend names when using plotBCV
edger plot Tutorial
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
2
votes
5
replies
2.0k
views
rlog, lfcShrink and vst on gene subset
deseq2 subsetting plot
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 10
0
votes
1
reply
2.7k
views
Plotting coverage from bam files
bam plot
updated 6.7 years ago by 67k • written 6.7 years ago by ▴ 40
0
votes
3
replies
1.4k
views
Adding gene names which are differentially expressed in the plot
edgeR plot differential gene expression
7.2 years ago fawazfebin ▴ 60
0
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0
replies
1.2k
views
Plotting DataTrack for non-model organism.
Gviz plot chipseq
7.4 years ago anupriyaverma1408 • 0
11
votes
15
replies
3.2k
views
edgeR - MDS Plot for Count Data
edger DEG mds plot
7.4 years ago baus87 • 0
2
votes
1
reply
1.1k
views
Plotting Gene Expression Data From Multiple Batches
batch effect microarray plot
updated 7.6 years ago by ★ 2.0k • written 7.6 years ago by ▴ 100
0
votes
1
reply
1.8k
views
Save multiple plots into single pdf from Deseq2 analysis?
plot pdf dev.off
updated 7.6 years ago by ★ 13k • written 7.6 years ago by • 0
0
votes
6
replies
1.8k
views
expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.7 years ago by • 0 • written 8.0 years ago by ▴ 10
0
votes
1
reply
1.5k
views
ConsensusClusterPlus - function "calcICL" - How the samples are ordered in the plots???
ConsensusClusterPlus calcICL plot
8.2 years ago • updated 7.7 years ago juan-pablo.cerapio-arroyo ▴ 10
1
vote
2
replies
2.2k
views
Manhattan plot from ChAMP data
champ plot manhattan plot
updated 7.9 years ago by ▴ 90 • written 7.9 years ago by ▴ 10
1
vote
3
replies
3.2k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 10
2
votes
4
replies
1.5k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 10
1
vote
1
reply
1.9k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
8.4 years ago oswaldo.lorenzo ▴ 10
2
votes
3
replies
1.9k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
8.4 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
1.1k
views
Plotting False discoveries vs genes selected
plot
8.5 years ago humberto_munoz • 0
4
votes
1
reply
2.3k
views
gviz: add horizontal line to DataTrack object
bioconductor gviz plot horizontal line
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 10
2
votes
2
replies
1.5k
views
Anyone know how to make a plot like this - I don't even know what it's called.
plot ggplot2
updated 8.6 years ago by ▴ 130 • written 8.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
changing the plot type in minet package
minet plot
8.8 years ago Angel ▴ 40
1
vote
1
reply
1.7k
views
ggplot same data, different plots
ggplot2 ggplot plot
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 50
0
votes
0
replies
1.2k
views
GenomeGraphs, modify Y axis
genomegraphs biomart plot graphics
9.4 years ago koenhendriks89 • 0
1
vote
2
replies
1.8k
views
"confint" type in DataTrack function (Gviz)
Gviz plot confidence interval
updated 9.5 years ago by ★ 1.6k • written 9.5 years ago by ▴ 40
2
votes
2
replies
2.1k
views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
updated 9.5 years ago by 67k • written 9.5 years ago by ▴ 40
0
votes
1
reply
1.6k
views
Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
9.6 years ago bruce.moran ▴ 30
0
votes
5
replies
2.3k
views
R plot error
r bioconductor graph plot data representation in graphical forms
9.6 years ago megha.24may • 0
50 results • Page 1 of 1
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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