1
vote
2
replies
972
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Log fold change interpretation of time series with Wald test
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4.4 years ago jd348 • 0
0
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1
reply
903
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RNA Seq - Venn Diagramm - display exclusively expressed genes
VennDetail DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
3
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2
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`GenomicRanges` cheat sheet
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4.4 years ago chirag.parsania ▴ 10
0
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3
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DiifBind_DBA_report
DiffBind
updated 4.1 years ago by ★ 5.2k • written 4.4 years ago by ▴ 90
3
votes
7
replies
2.1k
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small dimensions in the matrix of counts from smallRNA using DESEq2
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4.4 years ago andreia ▴ 10
0
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1
reply
1.9k
views
Job: Postdoctoral Scientist in Statistical Bioinformatics and Software Development, WEHI, Melbourne, Australia
Australia
updated 4.4 years ago by • 0 • written 4.4 years ago by 53k
0
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0
replies
1.3k
views
Job: Senior Bioinformatician at AstraZeneca - Biology/Chemistry Interface and Proteomics Research (Cambridge, UK)
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4.4 years ago Sergio Martinez Cuesta • 0
0
votes
2
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views
PureCN COSMIC VCF via PureCN.R - is there an option?
PureCN COSMIC
updated 4.4 years ago by ▴ 130 • written 4.4 years ago by ▴ 10
0
votes
0
replies
596
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msaR not displaying in newer versions of Chrome, Firefox but works on Safari
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4.4 years ago amon • 0
2
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3
replies
2.8k
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Choosing an svalue threshold from apeglm shrunken results in DESeq2
apeglm DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 40
2
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3
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1.5k
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Repeated tag sequence error
edgeR
updated 4.4 years ago by 53k • written 4.4 years ago by • 0
3
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2
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1.6k
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Sequencing depth before and aftr normalisation with DESEQ2 doesn't look as expected: Problem?
normalisation DESEQ2
updated 4.4 years ago by ★ 1.4k • written 4.4 years ago by • 0
0
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0
replies
1.2k
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ChAMP.CNA analysis
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4.4 years ago FWNL15 • 0
0
votes
2
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1.6k
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Gene expression in R
limma edgeR Biobase GeneExpression
4.4 years ago sogol.bouyeh • 0
0
votes
0
replies
1.2k
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One read per line and other ordering of reads in Gviz
Gviz
4.4 years ago pillailab1 • 0
3
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5
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7.9k
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How does edgeR calculate fold change?
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4.4 years ago zhxiaokang ▴ 20
0
votes
2
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1.6k
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Failed to get promoters using promoters() in R 4.0.3.
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4.4 years ago Arslan • 0
0
votes
0
replies
944
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LRBaseDbi error
LRBaseDbi AnnotationHub
4.4 years ago Francois Marchildon ▴ 20
0
votes
1
reply
2.8k
views
Retrieve isoform sequences for a protein from UniProt
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updated 4.4 years ago by ★ 6.6k • written 4.4 years ago by ▴ 10
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votes
2
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1.7k
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Ensembl archive challenges
biomaRt
updated 4.4 years ago by ★ 6.6k • written 4.4 years ago by • 0
2
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1
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1.6k
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Diffbind: differences between design vs no design (same comparison)?
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by • 0
5
votes
7
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2.5k
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Nanostringdiff - defining contrast values for blocking variables in glm
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updated 4.4 years ago by 68k • written 4.4 years ago by • 0
2
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2
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1.2k
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How to obtain a GC content file to use in HMMcopy?
HMMcopy
4.4 years ago bpitarch • 0
1
vote
2
replies
1.3k
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CAGEexp vs CAGErseq
CAGEr
updated 4.2 years ago by ▴ 180 • written 4.8 years ago by ▴ 10
1
vote
2
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918
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Please merge Charles-23991 and 7857
meta
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
votes
0
replies
973
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rtracklayer v 1.53.1 refuses to load xz-compressed files.
rtracklayer
4.4 years ago Charles • 0
0
votes
0
replies
879
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packages for integrative genomics
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4.4 years ago Bogdan ▴ 670
6
votes
10
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ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 4.4 years ago by • 0 • written 4.7 years ago by ▴ 20
0
votes
0
replies
1.4k
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Introduction to DEP - data imputation
DEP impute
4.4 years ago catherine.li • 0
0
votes
4
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1.9k
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window parameter in DataTrack function with a single sample
Gviz
4.4 years ago • updated 4.3 years ago rbenel ▴ 50
0
votes
1
reply
1.2k
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Pushing a new build of package to Bioconductor
fmrs
updated 4.4 years ago by ★ 13k • written 4.4 years ago by • 0
0
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0
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ConsensusClusterPlus: annotate a class to the heatmap
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4.4 years ago Gian ▴ 30
0
votes
1
reply
1.5k
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is.null(pData) | class(pData) == "data.frame" is not TRUE
ballgown
updated 4.4 years ago by 16k • written 4.4 years ago by • 0
0
votes
0
replies
670
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Gvi
4.4 years ago rbenel ▴ 50
0
votes
1
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2.1k
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enrichGO analysis
clusterProfiler
updated 4.4 years ago by ★ 4.1k • written 4.4 years ago by • 0
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2
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DiffBind fold parameter vs. IfcThreshold in DESeq2
DiffBind
4.4 years ago Shuwan ▴ 10
1
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1
reply
3.5k
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ComplexHeatmap: Not able to change the annotations size of the heatmap
ComplexHeatmap Anno Annotation
updated 4.4 years ago by ▴ 290 • written 4.4 years ago by ▴ 10
1
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6
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3.4k
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what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 4.4 years ago by • 0 • written 4.4 years ago by ▴ 40
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3
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DEseq2 extracting results from multifactor design
timecourse DESeq2 RNASeq
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
0
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1
reply
1.5k
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What does one-sided p-value in DESeq2 mean in biological terms?
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updated 4.4 years ago by 43k • written 4.4 years ago by • 0
1
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6
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1.8k
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DESeq2 design for paired samples
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updated 4.4 years ago by 43k • written 4.4 years ago by ▴ 10
0
votes
1
reply
1.8k
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Help me do a gene enrichment analysis
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updated 4.4 years ago by ▴ 40 • written 4.4 years ago by • 0
1
vote
4
replies
998
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normalising Biological replicates for differential analysis
DESeq2 Rtudio
updated 4.4 years ago by ★ 1.4k • written 4.4 years ago by • 0
3
votes
0
replies
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DSS : Different results between DMLtest and DMLtest.multifactor
DSS
4.4 years ago cer.chloe ▴ 30
0
votes
1
reply
1.2k
views
How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 4.4 years ago by 53k • written 4.4 years ago by • 0
0
votes
2
replies
1.5k
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limma voom; fitted lines, factors that aren't of interest, and hypothesis testing
topTable voom contrasts
4.4 years ago James • 0
5
votes
6
replies
2.5k
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How to calculate dispersion DESeq2 - Step by Step
DGE DESeq2 Differential
4.4 years ago Zeke Smith ▴ 10
2
votes
7
replies
1.7k
views
LIMMA - for Microarrays?
limma
written 4.4 years ago by • 0
0
votes
1
reply
978
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pairwise within sample
DESeq2 microbiome
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
2
votes
8
replies
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How does the design formula affect dispersion estimate in DESeq2?
deseq2
updated 4.4 years ago by 43k • written 5.4 years ago by ▴ 20
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