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"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
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vegdist for beta diversity
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Genome database and transcription database have different lengths
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makeOrgPackage Error in result_bind(res@ptr, params) : NOT NULL constraint failed: genes.GID
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DirichletMultinomial Package Not Functioning
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6.6 years ago helenlong1 • 0
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RNA-seq time course analysis with only one experimental condition
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6.6 years ago mah19 • 0
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diffHic presplit_map.py --sig option for HiC libraries prepared with restriction enzyme cocktail from Arima genomics
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updated 6.6 years ago by ★ 29k • written 6.6 years ago by • 0
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questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
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6.6 years ago ycchang • 0
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Conditional Quantile Normalization (cqn) error
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readGAlignmentPairs fail to read paired end data
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how to add background gene set to enrichMesh
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6.6 years ago mkang1996 • 0
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6.6 years ago bio-explorer • 0
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unable to install TCGAbiolinks
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6.6 years ago hoseyni.sb • 0
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News: Bioconductor Technical Advisory Board Nominees
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ATAC-QC fragSizeDist function
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6.6 years ago D ▴ 10
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DESeq2: name and contrast arguments return partially different results under specific circumstances -- bug?
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Microarray Data Analysis CDF Problem
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DESeq2 formula to include batch AND patient, and condition ?
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updated 6.6 years ago by 43k • written 6.6 years ago by • 0
46,742 results • Page 204 of 935
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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