5
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6
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extracting Allele Read Counts
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8.7 years ago Bogdan ▴ 670
0
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2
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DESeq2: how to interpret the heatmap clustering samples
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8.7 years ago lina.faller ▴ 10
0
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Error in c(DataFrameList(META = meta), tbls[unique(tags)])
VariantAnnotation
updated 8.7 years ago by 16k • written 8.7 years ago by • 0
2
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12
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biomaRt does not return entrezgene id
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updated 8.7 years ago by ▴ 800 • written 8.7 years ago by • 0
1
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5
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Force DESeq2 to use pseudocounts
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8.7 years ago manuelw • 0
6
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7
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4.2k
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Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
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updated 3.6 years ago by ▴ 10 • written 8.7 years ago by ▴ 840
3
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4
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1.7k
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Does Rsamtools support tag names with number characters? i.e ."B1"
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updated 8.7 years ago by 25k • written 8.7 years ago by • 0
0
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3
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3.2k
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ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
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updated 8.7 years ago by ★ 1.3k • written 8.7 years ago by • 0
0
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0
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1.2k
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qaProcess.timeline in flowQ won't accept filepath with spaces
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8.7 years ago hefin_8 • 0
2
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8
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limma interaction contrasts
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updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 20
0
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0
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1.0k
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an error in TitanCNA
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8.7 years ago Bogdan ▴ 670
0
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1
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Different padj value after multiple testing
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updated 8.7 years ago by 43k • written 8.7 years ago by • 0
5
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3
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Classes and methods for working with segmented copy number data
cgh copynumber
updated 8.7 years ago by 700 • written 9.4 years ago by 21k
6
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4
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2.7k
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Problem running dexseq in parallel using BiocParallel
dexseq
updated 8.7 years ago by ▴ 30 • written 8.7 years ago by ▴ 30
0
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0
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1.2k
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imputing data using pcaMethods with large amounts of missing data in rows
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8.7 years ago eli-sava • 0
0
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2
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1.1k
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bestglm with DESeq2 dispersions
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8.7 years ago kodream ▴ 20
0
votes
0
replies
2.0k
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use control_condition in heatmap with cummeRbund
cummerbund heatmap
8.7 years ago domenico.somma • 0
2
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1
reply
1.5k
views
Corrupt AnnotationHub database - previously posted fix not working
annotation error
8.7 years ago tullyij1 • 0
2
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3
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5.3k
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Select specific variants from vcf file
vcf
updated 8.7 years ago by 25k • written 8.7 years ago by • 0
0
votes
1
reply
1.5k
views
BiSeq - modelling options betaRegression
biseq RRBS betaregression
8.7 years ago l.eijssen • 0
1
vote
4
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2.5k
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New to mass spec data analysis
data analysis xcms Tutorial
updated 14 months ago by • 0 • written 8.7 years ago by • 0
9
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4
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Limma: Paired samples, multiple groups: problems understanding contrasts and model.matrix
microarray limma design and contrast matrix
8.7 years ago Anna ▴ 50
1
vote
0
replies
1.5k
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generate table of counts with strand-specific paired-end RNA-seq data
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8.7 years ago teresati ▴ 10
0
votes
0
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1.6k
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how to use Methylumi background correction (noob) in CHAMP
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8.7 years ago rahel14350 ▴ 10
0
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1
reply
1.5k
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Monocle group sizes
monocle
8.7 years ago ribioinfo ▴ 100
0
votes
0
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931
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FEM Errors out after Monte Carlo Runs
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8.7 years ago mnaymik ▴ 10
0
votes
0
replies
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Job: Research Scientist for Bioinformatics, University of Minnesota
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8.7 years ago mmacchie • 0
2
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5
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Error involving ChIPQCreport
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updated 8.7 years ago by ▴ 420 • written 8.8 years ago by • 0
1
vote
1
reply
908
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Sorting the VIEW index in ascending/descending order
R diffbind
updated 8.7 years ago by 700 • written 8.7 years ago by ▴ 60
0
votes
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reply
1.6k
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salmon quantification - identical transcripts in fasta file
salmon
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 30
6
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12
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Error in getBM of biomaRt package
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updated 8.7 years ago by • 0 • written 8.9 years ago by ▴ 110
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votes
1
reply
1.2k
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probe set-gene relation
probe geneid probeset
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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1
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2.4k
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R package for analysis Agilent microarray?
agilent microarrays
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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0
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1.5k
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gage pca loadings
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8.7 years ago MT ▴ 10
0
votes
1
reply
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error in getsymbol function
symbol
updated 8.7 years ago by ★ 4.1k • written 8.7 years ago by • 0
2
votes
6
replies
5.3k
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Difference between fitFeatureModel and fitZIG in metagenomeSeq
metagenomeseq
8.8 years ago • updated 8.7 years ago sasha • 0
0
votes
1
reply
990
views
uisng image command
image
8.7 years ago farahqureshi5 • 0
0
votes
6
replies
2.4k
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DEXSeq Error in FUN(X[[i]], ...) : subscript out of bounds not sure why
dexseq
8.7 years ago badribio • 0
0
votes
0
replies
880
views
cluserRepro for IGP calculation - long running time
clusterRepro
8.7 years ago andres.firrincieli ▴ 50
3
votes
1
reply
11k
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Error using function NbClust regarding multiple values in the argument "index" of package NbClust for getting the optimal number of clusters of a dat…
NbClust clustering looping list object function creation
updated 8.7 years ago by ▴ 20 • written 10.3 years ago by ▴ 840
0
votes
1
reply
3.2k
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How does Limma calculate the log2 fold change?
limma
updated 8.7 years ago by 53k • written 19.6 years ago by ▴ 630
1
vote
8
replies
7.9k
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Limma, SAM and Fold Change Calculation
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updated 8.7 years ago by 53k • written 18.5 years ago by ▴ 80
0
votes
2
replies
3.1k
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Biostrings: retrieve 3'UTR sequence with Transcript
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updated 8.7 years ago by ★ 6.6k • written 8.7 years ago by • 0
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4
replies
2.1k
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Query Error: biomaRt
biomart bioconductor
8.7 years ago Jaspreet Kaur • 0
0
votes
7
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3.1k
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DESeq2 analysis with pairwise analysis and batch effect correction
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updated 8.7 years ago by 43k • written 8.7 years ago by • 0
4
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3
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EdgeR on miRNA data
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updated 8.7 years ago by ★ 29k • written 8.7 years ago by • 0
3
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3
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[edgeR Usage] Constructing DGE test with fewer input variables
edger
updated 8.7 years ago by ★ 29k • written 8.7 years ago by ▴ 10
0
votes
2
replies
1.3k
views
Deseq2 to nanlyse one level / condition
deseq2
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
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5
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News: Ensembl 88 is out!
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8.7 years ago Thomas Maurel ▴ 800
0
votes
0
replies
1.2k
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crlmm for new chip?
crlmm
8.7 years ago Scottt Hazelhurst • 0
46,699 results • Page 339 of 934
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For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
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Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
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I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
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Answer: Large logFC but somewhat high FDR
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