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18
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News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 4 weeks ago
shepherl
3.9k
0
votes
7
replies
759
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
11 weeks ago • updated 27 days ago
shepherl
3.9k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.2 years ago by
shepherl
3.9k
4
votes
9
replies
3.0k
views
News:
Ensembl release 84 is out!
ensembl
mart
release84
biomart
ensembl release
News
updated 8.1 years ago by
arielpaulson
▴ 20 • written 8.2 years ago by
Thomas Maurel
▴ 800
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.6 years ago • updated 2.1 years ago
shepherl
3.9k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.1 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.9k
7
votes
4
replies
1.7k
views
News:
Bioconductor 3.7 is released
bioconductor
release
News
written 6.1 years ago by
Valerie Obenchain
★ 6.8k
1
vote
3
replies
1.3k
views
News:
European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference
EuroBioc
News
4.7 years ago • updated 4.6 years ago
Laurent Gatto
1.6k
1
vote
2
replies
1.3k
views
News:
Registrations are now open for BioC Asia 2022
Asia
BioCAsia
Conferences
Events
News
19 months ago • updated 18 months ago
Peter Hickey
▴ 740
1
vote
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.6 years ago
shepherl
3.9k
0
votes
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.6 years ago • updated 4.5 years ago
shepherl
3.9k
0
votes
2
replies
1.3k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
6.5 years ago
shepherl
3.9k
0
votes
2
replies
1.0k
views
News:
List of Deprecated Packages for Bioc3.7
deprecate
News
updated 6.5 years ago by
flipdiving2017
• 0 • written 6.5 years ago by
shepherl
3.9k
7
votes
5
replies
3.0k
views
News:
European Bioconductor Developers Meeting: Cambridge 7/8th December 2015
developers
conference
workshop
News
updated 8.6 years ago by
Laurent Gatto
1.6k • written 8.7 years ago by
Mark Dunning
★ 1.1k
20
votes
13
replies
3.5k
views
News:
markdown is coming to the support site
markdown
News
6.8 years ago • updated 6.2 years ago
Lucas Schiffer
▴ 240
4
votes
11
replies
1.7k
views
News:
Bioconductor 3.8 is released
bioconductor
news
release
News
updated 5.4 years ago by
restat110
• 0 • written 5.6 years ago by
Valerie Obenchain
★ 6.8k
0
votes
4
replies
1.2k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 4 days ago by
angelaesper43
• 0 • written 19 months ago by
Maria Doyle
▴ 70
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.5 years ago • updated 3.0 years ago
shepherl
3.9k
6
votes
6
replies
3.3k
views
News:
Bioconductor Git/GitHub Mirrors
git
github
git-svn bridge
subversion
News
updated 8.9 years ago by
Guangchuang Yu
★ 1.2k • written 8.9 years ago by
Dan Tenenbaum
★ 8.2k
9
votes
4
replies
2.8k
views
News:
Experimental data package 'seqc'
seqc
rsubread
featurecounts
subjunc
ercc
News
9.5 years ago
Wei Shi
★ 3.6k
0
votes
2
replies
914
views
News:
List of Deprecated Packages for Bioc3.17
Bioconductor
Deprecation
Devel
devel
13 months ago • updated 11 months ago
shepherl
3.9k
9
votes
8
replies
6.7k
views
News:
new package `ggtree` in devel branch
ggtree
phylogenetic
News
updated 9.3 years ago by
remi.tournebize
▴ 10 • written 9.3 years ago by
Guangchuang Yu
★ 1.2k
5
votes
5
replies
2.1k
views
News:
Ensembl 88 is out!
ensembl
ensembl mart
biomart
e!88
News
7.1 years ago
Thomas Maurel
▴ 800
0
votes
2
replies
1.7k
views
News:
ChIPpeakAnno::getAnnotation get Exons
chippeakanno
News
updated 9.2 years ago by
Ou, Jianhong
★ 1.3k • written 9.2 years ago by
Julie Zhu
★ 4.3k
9
votes
7
replies
3.1k
views
News:
Conference: BioC 2016: Where Software and Biology Connect, Stanford, 24-26 June
BioC2016
Conference
News
updated 7.9 years ago by
shepherl
3.9k • written 8.3 years ago by
Martin Morgan
25k
10
votes
2
replies
936
views
News:
SUPPORT SITE UPGRADE COMPLETE
SupportSite
updated 3.6 years ago by
Steve Lianoglou
★ 13k • written 3.6 years ago by
shepherl
3.9k
5
votes
1
reply
3.4k
views
News:
Bioconductor-related papers -- special F1000Research collection for Bioc2016
publication
workflows
benchmark
teaching
News
updated 8.1 years ago by
thomas.ingraham
▴ 10 • written 8.2 years ago by
Wolfgang Huber
★ 13k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.8 years ago • updated 4.7 years ago
shepherl
3.9k
1
vote
3
replies
1.3k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.9k
0
votes
1
reply
300
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
10 weeks ago • updated 7 weeks ago
shepherl
3.9k
1
vote
1
reply
1.8k
views
News:
New Master of Science in Quantitative and Computational Biology at University of Trento, Italy
computational biology
bioinformatics
teaching
master
News
updated 7.9 years ago by
Chloe2013025
• 0 • written 7.9 years ago by
enridomenici
▴ 10
0
votes
1
reply
1.1k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
6.4 years ago
shepherl
3.9k
0
votes
1
reply
1.2k
views
News:
Exploiting computational immunology to understand the immune system| Symposium
computational biology
immunology
bioinformatics
symposium
RIMLS
News
updated 7.4 years ago by
Maxim.Baranov
• 0 • written 7.4 years ago by
maximbaranov23
• 0
5
votes
2
replies
2.7k
views
News:
Ensembl release 81 is out!
human
mouse
GRCh38
biomart
Ensembl
News
updated 8.8 years ago by
Sonali Arora
▴ 390 • written 8.9 years ago by
Thomas Maurel
▴ 800
1
vote
2
replies
791
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 19 months ago by
Louisse
▴ 10
3
votes
1
reply
713
views
News:
Service problems noted
bioconductor
updated 2.6 years ago by
shepherl
3.9k • written 2.6 years ago by
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
980
views
News:
Deadline for devel branch 3.9 to pass R CMD build and R CMD check
release
devel
deadline
freeze
News
5.1 years ago
shepherl
3.9k
8
votes
10
replies
2.1k
views
News:
Bioconductor 3.2 is released!
news
News
updated 8.6 years ago by
JunLVI
▴ 40 • written 8.6 years ago by
Dan Tenenbaum
★ 8.2k
3
votes
5
replies
1.4k
views
News:
sorted the results of function dba.report in DiffBind R package
diffbind
News
updated 5.5 years ago by
Rory Stark
★ 5.2k • written 5.5 years ago by
bioqianyang
• 0
0
votes
1
reply
1.0k
views
News:
Community engagement and outreach award
bioconductor
bioc2020
award
community
News
written 3.9 years ago by
shepherl
3.9k
3
votes
1
reply
1.2k
views
News:
Bioconductor Mendeley Group
bioconductor
publication
News
updated 7.7 years ago by
taniaak062
• 0 • written 7.7 years ago by
Sean Davis
21k
0
votes
1
reply
1.6k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
7.6 years ago • updated 7.4 years ago
Yuan Tian
▴ 90
0
votes
1
reply
870
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.4 years ago
shepherl
3.9k
0
votes
1
reply
2.0k
views
News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
7.7 years ago
Yuan Tian
▴ 90
0
votes
2
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.9k
4
votes
1
reply
3.8k
views
News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
Awards
Recognition
News
4.1 years ago • updated 4.0 years ago
shepherl
3.9k
1
vote
1
reply
1.5k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 9.6 years ago by
orkanilbay
• 0 • written 9.6 years ago by
Julie Zhu
★ 4.3k
0
votes
2
replies
1.5k
views
News:
Looking to attend to a Bioconductor course for biologists in Europe
course
News
updated 9.0 years ago by
andrew.j.skelton73
▴ 370 • written 9.0 years ago by
laianavarromartin
▴ 20
0
votes
1
reply
1.4k
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
6.5 years ago
shepherl
3.9k
5
votes
2
replies
1.4k
views
News:
BioC2019 talk/workshop/scholarship submission deadline MARCH 15
BioC2019
News
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.3 years ago by
Levi Waldron
★ 1.1k
495 results • Page
1 of 10
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Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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