Bioconductor Installation

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Installation Bioconductor

7 months ago shepherl 4.1k

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by hong • 0

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817

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BiocManager installation GEOquery

updated 2.4 years ago by Basti ▴ 780 • written 2.4 years ago by surinder.chd90 • 0

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installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb

2.5 years ago elmfinds • 0

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rtracklayer GenomicRanges Installation

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by Johanna • 0

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GRanges packages installation

updated 2.6 years ago by shepherl 4.1k • written 2.6 years ago by Eli • 0

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package symlinks directories installation Dropbox

updated 2.7 years ago by Hervé Pagès 16k • written 2.7 years ago by jose ▴ 10

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packages installation Bioconductor updating

updated 2.7 years ago by Marcel Ramos 700 • written 2.8 years ago by jose ▴ 10

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Installation

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by dmahoney • 0

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16k

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apple m1 installation silicon

updated 3.0 years ago by Gordon Smyth 52k • written 3.5 years ago by Brian ▴ 90

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3.9k

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DESeq2 Problem installation with

updated 3.4 years ago by Lluís Revilla Sancho ▴ 760 • written 3.4 years ago by Nahid • 0

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hdf5r installation

updated 3.5 years ago by Hervé Pagès 16k • written 3.5 years ago by snp31 • 0

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3.7k

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Installation

updated 3.5 years ago by James W. MacDonald 67k • written 3.5 years ago by gray • 0

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macos installation

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by Joe ▴ 10

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scran installation

3.9 years ago • updated 3.8 years ago TJ • 0

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installation time machine mran rspm

updated 4.3 years ago by Martin Morgan 25k • written 4.3 years ago by Michael Steinbaugh ▴ 90

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deseq2 bioconductor windows xml installation

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by sarah3 • 0

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2.1k

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ensembldb package installation BiocManager

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by dylangagler • 0

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1.6k

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Installation Packages Missing

updated 4.4 years ago by Laurent Gatto 1.6k • written 4.6 years ago by sreedta8 ▴ 10

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4.8k

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bioconductor installation proxy BiocManager

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by chen • 0

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3.1k

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DelayedArray warning installation

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by inzirio ▴ 10

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1.1k

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Installation

updated 4.6 years ago by Martin Morgan 25k • written 4.6 years ago by terrylthomas2804 • 0

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4.9k

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installation permission denied RTCGAToolbox TCGAbiolinks

4.6 years ago julia.tutzauer • 0

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1.8k

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R installation packages annotatr biocmanager

4.7 years ago dakarai_esgdaille ▴ 10

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1.3k

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software error HTSeq installation

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by eric33150 • 0

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1.4k

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packages installation GenomeGraphs

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by alex • 0

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software error installation

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by GENOMIC_region • 0

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2.1k

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goseq installation

5.0 years ago gdalsky ▴ 40

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newpackage vignette installation

updated 5.2 years ago by shepherl 4.1k • written 5.2 years ago by Krutik Patel ▴ 10

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8.9k

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Rhtslib installation error zlib

updated 5.2 years ago by leoadam014 • 0 • written 6.2 years ago by boboshaq • 0

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2.1k

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Genesis Installation

updated 5.4 years ago by Mike Smith ★ 6.6k • written 5.4 years ago by winstondunnmd ▴ 10

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2.0k

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flowCore Installation dependency

updated 5.6 years ago by Jake Wagner ▴ 310 • written 5.6 years ago by Robert Baer ▴ 70

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1.2k

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ChemmineOB Linux Installation

5.8 years ago jandrosavich • 0

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1.1k

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installation

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by thatwasfunny • 0

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1.2k

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installation biocmanager

updated 6.1 years ago by shepherl 4.1k • written 6.1 years ago by Michael Steinbaugh ▴ 90

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1.7k

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biocmanager installation

6.3 years ago Kyle Johnsen ▴ 30

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9.8k

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biocinstaller custom library path installation package installation

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by ariel ▴ 20

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1.3k

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delayedarray bug installation

updated 6.4 years ago by Martin Morgan 25k • written 6.5 years ago by simon.andrews • 0

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1.9k

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ChAMP software error installation

6.5 years ago chxp • 0

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installation minfi bumphunter

updated 6.6 years ago by Peter Hickey ▴ 740 • written 6.6 years ago by muellerf • 0

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installation

6.6 years ago xinfu.xia • 0

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1.4k

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rhstlib installation compilation error

6.7 years ago Ryan C. Thompson ★ 7.9k

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2.0k

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installation phyloseq

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by layeb • 0

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3.6k

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bioconductor biocinstaller installation conda

6.8 years ago jol.espinoz ▴ 40

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1.9k

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bioclite package installation installation install

updated 6.9 years ago by Mike Smith ★ 6.6k • written 6.9 years ago by cristian ▴ 10

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3.1k

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ubuntu installation

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by Deleted ▴ 70

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2.8k

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goseq installation

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by philipp.voss • 0

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1.4k

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installation CardinalWorkflows Imaging mass spectrometry Cardinal

updated 7.1 years ago by Valerie Obenchain ★ 6.8k • written 7.1 years ago by xander.spotbeen • 0

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biocinstaller root installation installation problem

7.2 years ago charles.tilford ▴ 10

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phyloseq installation ade4 macos

7.2 years ago sprague • 0

50 results • Page 1 of 1

Recent ...

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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