Showing : RStudio • reset
0
votes
5
replies
2.9k
views
New Version of CummeRbund?
cummerbund rstudio
8.3 years ago lreiter • 0
0
votes
20
replies
6.1k
views
SummarizeOverlaps in R
summarizeoverlaps Bam rstudio
updated 8.8 years ago by ▴ 90 • written 8.8 years ago by ▴ 10
9
votes
11
replies
5.8k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 7 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
3
votes
3
replies
16k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
7.6 years ago Jon Bråte ▴ 250
0
votes
4
replies
1.4k
views
problem in installing flowclust
rstudio flowclust
updated 6.9 years ago by 3.9k • written 6.9 years ago by • 0
0
votes
3
replies
1.3k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures rversion3.2.1 3.0 rstudio
8.6 years ago serpalma.v ▴ 60
0
votes
2
replies
3.6k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
6.5 years ago clarisbaby • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.5 years ago by ▴ 20 • written 4.5 years ago by • 0
0
votes
9
replies
2.4k
views
is AClust package still available?
Aclust Aclustering Rstudio Clusters
updated 8.7 years ago by ▴ 40 • written 8.8 years ago by ▴ 10
0
votes
3
replies
1.1k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 9.1 years ago by 65k • written 9.1 years ago by • 0
1
vote
3
replies
23k
views
Converting first column to rownames
rstudio
8.2 years ago John ▴ 30
0
votes
3
replies
2.6k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
6.9 years ago mszskb • 0
0
votes
1
reply
1.1k
views
What preprocessing needs to be done on the Experiment datasets
colon rstudio golubesets
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
0
votes
2
replies
1.8k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation variantannotation rstudio
updated 8.2 years ago by ★ 6.8k • written 8.2 years ago by • 0
0
votes
4
replies
2.8k
views
Unable to install Rcpp package for genefo
Rcpp genefo linux linux mint Rstudio
updated 7.8 years ago by • 0 • written 7.8 years ago by • 0
2
votes
1
reply
4.6k
views
Reading fasta file with multiple sequences
multiple sequences bioconductor rstudio seqinr
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
2
replies
1.1k
views
Problem with cummeRbund
rstudio cummerbund
7.2 years ago • updated 7.1 years ago sanathoi.guru • 0
2
votes
4
replies
1.7k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 7.0 years ago by ▴ 650 • written 7.0 years ago by • 0
0
votes
1
reply
1.2k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 6.9 years ago by ▴ 350 • written 6.9 years ago by • 0
2
votes
5
replies
796
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago • updated 5 months ago j_denton • 0
0
votes
1
reply
1.9k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 5.8 years ago by 41k • written 5.8 years ago by • 0
0
votes
4
replies
1.6k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 5.6 years ago by 41k • written 5.6 years ago by • 0
1
vote
8
replies
2.7k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
1
reply
2.3k
views
Upload error in RStudio running on Amazon - AMI
AMI RStudio upload error custom install
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by • 0
0
votes
3
replies
1.1k
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 9.0 years ago by ★ 8.2k • written 9.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Recent problem with biomaRt query
biomart biomaRt R rstudio
8.9 years ago nickp60 • 0
0
votes
3
replies
2.1k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 8.8 years ago by 41k • written 8.8 years ago by ▴ 10
1
vote
3
replies
3.5k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 10
2
votes
5
replies
5.5k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 830
3
votes
7
replies
4.6k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Error viewing the data set Golub_Merge
golubEsets rstudio
updated 8.2 years ago by 65k • written 8.2 years ago by • 0
0
votes
1
reply
1.2k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 20
2
votes
2
replies
3.8k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
2
votes
1
reply
8.4k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 4.5 years ago by 25k • written 4.5 years ago by ▴ 20
0
votes
1
reply
937
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 4.2 years ago by 3.9k • written 4.2 years ago by • 0
1
vote
7
replies
2.9k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
3.1 years ago • updated 3.0 years ago Abby ▴ 10
1
vote
3
replies
465
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 5 months ago by 65k • written 5 months ago by • 0
0
votes
1
reply
2.2k
views
Unable to Install packages in R
rstudio
updated 2.6 years ago by 65k • written 2.6 years ago by • 0
0
votes
4
replies
3.0k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
2.7 years ago HELEN • 0
0
votes
1
reply
764
views
Issue with installation of a package.
RStudio flowFDA
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
2
votes
3
replies
501
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
5 months ago R_Page • 0
0
votes
1
reply
767
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
0
votes
1
reply
835
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 18 months ago by 65k • written 18 months ago by ▴ 430
5
votes
15
replies
11k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
1
vote
5
replies
2.2k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
2.6 years ago Sonia • 0
0
votes
14
replies
4.1k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 19 months ago by • 0 • written 22 months ago by • 0
0
votes
1
reply
1.0k
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
4
votes
5
replies
2.1k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 2.0 years ago by • 0
0
votes
1
reply
387
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 8 months ago by ★ 4.1k • written 8 months ago by • 0
0
votes
2
replies
364
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
5 months ago yee • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
Ireland, 34 minutes ago
France, 41 minutes ago
France, 54 minutes ago
UPF, Barcelona, Spain, 1 hour ago
Germany, 1 hour ago
Traffic: 498 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6