Showing : error • reset
1
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2
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2.8k
views
Errors installing mzR package
proteomics error
updated 6.6 years ago by 1.6k • written 6.6 years ago by • 0
2
votes
5
replies
5.2k
views
GDCdownload does not work
GDCdow tcgabiolinks error tcgadownload download_error
updated 6.8 years ago by ▴ 260 • written 6.8 years ago by • 0
0
votes
1
reply
947
views
Linking PhosMap to issue number: 953
error github package contribution
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
2
replies
1.9k
views
Biostrings: revComp error: Not compatible with STRSXP
biostrings Error Not compatible with STRSXP
6.9 years ago camille.4nier • 0
0
votes
1
reply
1.5k
views
Conda Env & biocLite("affyio") : < undefined symbol: gzclose >
Conda affyio error
7.0 years ago benjamin.saintpierre • 0
0
votes
6
replies
1.8k
views
DEsubs - Error in read.table during DEsubs command
DEsubs error
updated 7.1 years ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
2
replies
1.7k
views
Error in saving diffmeth data
error
7.2 years ago kjfilipski • 0
1
vote
5
replies
2.1k
views
How do I stop DESeq2 from loading and additional errors related to the package.
r deseq2 error
updated 7.3 years ago by ★ 1.1k • written 7.3 years ago by • 0
0
votes
0
replies
1.2k
views
Error while extracting pseudo amino acid composition using protr
r source code error
7.4 years ago shreyasarkar0 • 0
5
votes
7
replies
3.3k
views
Gage package; go.gset() function error: argument "go_id" is missing
gage package error
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 20
0
votes
1
reply
1.5k
views
Error: 'unknown input format' while trying http://bioconductor.org/packages/3.7/bioc
error oligo affy
7.4 years ago kritikamish99 ▴ 10
0
votes
1
reply
1.9k
views
[metagenomeSeq] "Error: Warning sample with one or zero features" from cumNormStatFast
metagenomeseq cumNormStatFast features error
7.4 years ago jol.espinoz ▴ 40
1
vote
1
reply
1.7k
views
Installing DESeq2 error: missing value where TRUE/FALSE needed
deseq2 error biocinstaller
updated 7.4 years ago by 25k • written 7.4 years ago by ▴ 10
3
votes
2
replies
2.0k
views
Unable to install a Bioconductor package to local directory
error biocinstaller
updated 7.5 years ago by 68k • written 7.5 years ago by • 0
0
votes
3
replies
4.6k
views
Error when constructing DESeqDataSetFromMatrix (Error in round(assay(se)): non-numeric argument to mathematical function)
deseq2 R error
updated 7.6 years ago by 43k • written 7.6 years ago by • 0
0
votes
3
replies
2.9k
views
incorrect biomaRt output order of gene list
biomart ensembldb error
7.6 years ago Yuqia • 0
3
votes
4
replies
17k
views
converting ensembl transcript ID to ensemble gene: problem & missing values
biomart error ensembldb
7.7 years ago • updated 7.6 years ago Yuqia • 0
0
votes
0
replies
760
views
qaProcess.timeline() - error - Unable to find file
error
7.7 years ago lloyd.izard ▴ 80
0
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0
replies
1.1k
views
ABarray process error for ABI Human Genome Survey V2 data set
Abarray error ABI Human Genome Survey V2
7.7 years ago judemtaylor • 0
3
votes
11
replies
5.4k
views
GEOquery http:// url error
geoquery error getgeo microarray geo
updated 7.7 years ago by 21k • written 8.5 years ago by • 0
0
votes
7
replies
7.1k
views
DESeq estimateSizeFactors() is returning error "Error: all(!is.na(value)) is not TRUE"
deseq2 error R estimatesizefactors zero
updated 3.5 years ago by • 0 • written 8.0 years ago by • 0
1
vote
1
reply
1.1k
views
ERROR: dependencies RWeka, rmcfs are not available for package BASiNET
dependencies error
updated 7.9 years ago by ★ 29k • written 7.9 years ago by • 0
0
votes
1
reply
663
views
I want to know how i solved this error?
error
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
2
replies
3.1k
views
gcrma error " 'Calloc' could not allocate memory"
gcrma error
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
1
vote
0
replies
1.6k
views
Problem with biomarRt's getSequence() function
biomart error plants_mart getSequence
8.0 years ago vsn ▴ 10
1
vote
2
replies
2.1k
views
TCGABiolinks::GDCquery() suddenly sending back unknown error
software error error tcgabiolinks GDCquery
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
2
votes
2
replies
3.0k
views
TCGAbiolinks Download ERROR
TCGA tcgabiolinks download error
updated 8.0 years ago by ▴ 40 • written 8.0 years ago by ▴ 10
0
votes
1
reply
2.0k
views
DESeq2: error with DESeqDataSet function
deseq2 error DESeqDataSet DESeqDataSet
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
1
vote
3
replies
2.9k
views
Pathview pathview kegg.native=TRUE throws error in img
pathview kegg error bioconductor rnaseq
updated 8.0 years ago by ▴ 40 • written 8.6 years ago by ▴ 30
3
votes
2
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4.5k
views
results(dds) error: couldn't find results. you should first run DESeq()
deseq2 results error
8.0 years ago hs.lansdell ▴ 20
2
votes
2
replies
1.5k
views
Problem with using `GRheatmapData` function in compEpiTools package
compEpiTools error heatmap
updated 8.1 years ago by ▴ 200 • written 8.1 years ago by • 0
0
votes
1
reply
2.4k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
0
votes
1
reply
3.8k
views
"Package which is only available in source form, and may need compilation of C/C++/Fortran"
networkBMA error
8.2 years ago milenamagalhaes • 0
1
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3
replies
2.0k
views
Error from eBayes in limma package
eBayes limma error
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
2
votes
1
reply
2.3k
views
Cummerbund error column name mismatch
cummerbund bug error
8.3 years ago tannerndrsn4 ▴ 20
2
votes
9
replies
23k
views
DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
deseq2 error
updated 4.1 years ago by 43k • written 8.3 years ago by ▴ 70
1
vote
7
replies
2.5k
views
Ballgown object construction error
ballgown scan error package
8.4 years ago • updated 8.3 years ago spaque57 • 0
0
votes
0
replies
1.2k
views
Error in readPlateList
cellhts2 error
8.3 years ago sil1 • 0
0
votes
2
replies
4.0k
views
Error using TCGAbiolinks "Error in fix.by(by.y, y) : 'by' must specify a uniquely valid column"
TCGA tcgabiolinks Error
8.3 years ago f.geist ▴ 20
0
votes
3
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3.2k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
8.4 years ago mszskb • 0
0
votes
0
replies
1.1k
views
TCGAbiolinks : TCGAdownload Error in curl
R tcgabiolinks tcgadownload error
8.4 years ago juniuskcc • 0
0
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0
replies
1.4k
views
Minfi reading command error
minfi error command read.metharray.exp cdf
8.4 years ago niutster • 0
3
votes
14
replies
4.8k
views
biomaRt - Error in getBM: The query to the BioMart webservice returned an invalid result
biomart error ensembl bioconductor ensembl mart
8.4 years ago daniel.carbajo • 0
0
votes
0
replies
6.8k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro error PlotGroups
8.4 years ago nicolas.descostes ▴ 20
3
votes
5
replies
2.2k
views
CNV parameter not working - MEDIPS
medips medip-seq error lukas
updated 8.4 years ago by ▴ 280 • written 8.4 years ago by • 0
2
votes
2
replies
1.5k
views
Deals with image value superior to 0,1 range
value ebimage writeImage error
8.5 years ago valerian.meline • 0
1
vote
0
replies
1.2k
views
oposSOM error in UseMethod("layout")
opossom layout error
8.5 years ago kimagure_ ▴ 10
0
votes
1
reply
2.0k
views
Error installing org.Hs.eg.db
org.hs.eg.db error
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
2
votes
1
reply
1.4k
views
Corrupt AnnotationHub database - previously posted fix not working
annotation error
8.6 years ago tullyij1 • 0
0
votes
0
replies
954
views
mulcom Error in input files
mulcom error differential gene expression microarray
8.6 years ago arronar • 0
159 results • Page 2 of 4
Recent ...
Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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