Showing : geneexpression • reset
5
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18
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897
views
DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 12 months ago by 36k • written 12 months ago by • 0
8
votes
7
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7.9k
views
DESeq2 timecourse - How to set the experimental design
deseq2 geneexpression timecourse
updated 7.6 years ago by 13k • written 7.6 years ago by ▴ 10
1
vote
6
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1.3k
views
how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 6.2 years ago by 36k • written 6.2 years ago by • 0
3
votes
5
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6.3k
views
limma voom accessing normalised counts tables
limma rnaseq geneexpression voom counts
updated 7.5 years ago by 13k • written 7.5 years ago by ▴ 10
2
votes
5
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1.0k
views
heatmap in R
r language microarray geneexpression
updated 6.7 years ago by ▴ 990 • written 6.7 years ago by • 0
1
vote
5
replies
5.4k
views
Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 3.6 years ago by 36k • written 3.6 years ago by ▴ 50
1
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4
replies
1.2k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 4.8 years ago by ▴ 120 • written 4.8 years ago by ▴ 60
1
vote
4
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1.0k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 10
0
votes
3
replies
988
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 6.1 years ago by 59k • written 6.1 years ago by ▴ 20
1
vote
3
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690
views
General suggestions regarding gene expression
geneexpression
updated 5.2 years ago by 45k • written 5.2 years ago by • 0
0
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3
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8.9k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 6.8 years ago by ▴ 780 • written 6.8 years ago by ▴ 10
1
vote
3
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380
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 15 months ago by 36k • written 15 months ago by • 0
1
vote
3
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366
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 17 months ago by 59k • written 17 months ago by • 0
0
votes
3
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1.0k
views
problem with WGCNA
geneexpression
updated 6.5 years ago by ★ 2.6k • written 6.5 years ago by • 0
0
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2
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317
views
Gene expression in R
limma edgeR Biobase GeneExpression
8 months ago sogol.bouyeh • 0
4
votes
2
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3.2k
views
Selecting genes based on expressional variance
geneexpression wgcna rnaseq
updated 7.6 years ago by 1.5k • written 7.6 years ago by ▴ 180
1
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2
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4.4k
views
explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 6.8 years ago by ★ 27k • written 6.8 years ago by ▴ 10
0
votes
2
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679
views
Methylation and gene expression data
methylation geneexpression
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 290
0
votes
2
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408
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Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
7 months ago p.l.chen • 0
2
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2
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190
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 7 weeks ago by • 0 • written 9 weeks ago by ▴ 10
2
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2
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456
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
11 months ago SUMIT • 0
2
votes
2
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1.2k
views
Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 7 months ago by ★ 1.2k • written 7 months ago by ▴ 10
0
votes
1
reply
122
views
GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 18 days ago by ▴ 210 • written 22 days ago by • 0
1
vote
1
reply
61
views
Error while using champ.SVD function
GeneExpression
updated 21 days ago by ▴ 280 • written 21 days ago by • 0
1
vote
1
reply
341
views
Accounting for fish body mass in DE?
GeneExpression edgeR
updated 16 months ago by 59k • written 16 months ago by • 0
1
vote
1
reply
4.4k
views
NA p and p adjusted value
geneexpression
updated 6.8 years ago by ★ 2.6k • written 6.8 years ago by • 0
1
vote
1
reply
780
views
gene expression data analysis
microarray geneexpression
updated 6.7 years ago by 59k • written 6.7 years ago by • 0
3
votes
1
reply
859
views
Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 4.5 years ago by ▴ 830 • written 4.5 years ago by • 0
0
votes
1
reply
808
views
Error in MetaQC R package.
r metaqc microarray geneexpression
6.4 years ago Agaz Hussain Wani ▴ 260
0
votes
1
reply
302
views
Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 17 months ago by ▴ 480 • written 17 months ago by • 0
0
votes
0
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778
views
Methylation and gene expression
methylation geneexpression
5.8 years ago Asma rabe ▴ 290
0
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0
replies
254
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
18 months ago coobzie • 0
0
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0
replies
41
views
Volcano plot: Putting calculated values in legend
GeneExpression
updated 4 weeks ago by 3.5k • written 4 weeks ago by • 0
0
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0
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706
views
Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
7.4 years ago Peter.Wood • 0
0
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0
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1.0k
views
easyRNASeq: Number of total counts
GeneExpression RNASeq Genetics Coverage Normalization BSgenome Biobase Biostrings biomaRt
8.1 years ago Guest User ★ 12k
0
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0
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553
views
Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
5.4 years ago shaheryar • 0
0
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0
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754
views
Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
5.7 years ago namilio • 0
37 results • Page 1 of 1
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Replies
Comment: Ensembl plants at annotationHub? by karenserrano • 0
Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen
Answer: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k
Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0
Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…
Comment: cellCounts() function floating point error by Wei Shi ★ 3.3k
Yes we are currently working on generating a small example for cellCounts.
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU by ksong • 0
Hi Dr Sudbery, yes I found looking at the coverage in IGV helps a lot. I did find some differences between CDS and UTR and between samples.…
Votes
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
Answer: Handling NA values in limma's voom design matrix
Answer: Handling NA values in limma's voom design matrix
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