Showing : rstudio • reset
0
votes
5
replies
3.3k
views
New Version of CummeRbund?
cummerbund rstudio
9.3 years ago lreiter • 0
0
votes
20
replies
7.5k
views
SummarizeOverlaps in R
summarizeoverlaps Bam rstudio
updated 9.8 years ago by ▴ 90 • written 9.8 years ago by ▴ 10
9
votes
14
replies
8.9k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 9 months ago by 4.1k • written 3.3 years ago by ▴ 40
3
votes
3
replies
17k
views
Error in Knit R Markdown document (could not find function "Biocexptpkg")
rmarkdown rstudio knitr
8.6 years ago Jon Bråte ▴ 260
0
votes
4
replies
1.8k
views
problem in installing flowclust
rstudio flowclust
updated 7.9 years ago by 4.1k • written 7.9 years ago by • 0
0
votes
3
replies
1.5k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures rversion3.2.1 3.0 rstudio
9.6 years ago serpalma.v ▴ 60
0
votes
2
replies
4.2k
views
Error in file.choose() : file choice cancelled
package development bioconductor rstudio rmarkdown vignettes
7.5 years ago clarisbaby • 0
0
votes
5
replies
2.2k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
0
votes
9
replies
2.8k
views
is AClust package still available?
Aclust Aclustering Rstudio Clusters
updated 9.8 years ago by ▴ 40 • written 9.8 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 10.1 years ago by 68k • written 10.1 years ago by • 0
1
vote
3
replies
25k
views
Converting first column to rownames
rstudio
9.2 years ago John ▴ 30
0
votes
3
replies
3.0k
views
error installing cummeRbund in R studio (Windows desktop)
Rstudio cummerbund error
7.9 years ago mszskb • 0
0
votes
1
reply
1.3k
views
What preprocessing needs to be done on the Experiment datasets
colon rstudio golubesets
updated 9.2 years ago by 68k • written 9.2 years ago by • 0
0
votes
2
replies
2.0k
views
Gene symbol annotation not converted for intergenic SNPs with multiple genes
annotation variantannotation rstudio
updated 9.2 years ago by ★ 6.8k • written 9.2 years ago by • 0
0
votes
4
replies
3.3k
views
Unable to install Rcpp package for genefo
Rcpp genefo linux linux mint Rstudio
updated 8.8 years ago by • 0 • written 8.8 years ago by • 0
2
votes
1
reply
5.4k
views
Reading fasta file with multiple sequences
multiple sequences bioconductor rstudio seqinr
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
0
votes
2
replies
1.4k
views
Problem with cummeRbund
rstudio cummerbund
8.2 years ago • updated 8.1 years ago sanathoi.guru • 0
2
votes
4
replies
2.0k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 8.0 years ago by ▴ 670 • written 8.0 years ago by • 0
0
votes
1
reply
1.4k
views
can a function outliers be applied for a flowframe?
bioconductor flow cytometry rstudio
updated 7.9 years ago by ▴ 360 • written 7.9 years ago by • 0
4
votes
6
replies
2.8k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 7 months ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
2.2k
views
DeSeq2 installation on ubuntu fails
deseq2 R ubuntu bioconductor rstudio
updated 6.8 years ago by 43k • written 6.8 years ago by • 0
0
votes
4
replies
2.0k
views
New computer won't install DESeq2
deseq2 rstudio install error
updated 6.6 years ago by 43k • written 6.6 years ago by • 0
1
vote
8
replies
3.2k
views
DESeq2/SummarizedExperiment RStudio shows Object With Null Pointer
deseq2 null summarizedexperiment rstudio
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
0
votes
1
reply
2.6k
views
Upload error in RStudio running on Amazon - AMI
AMI RStudio upload error custom install
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by • 0
0
votes
3
replies
1.4k
views
how to include System Call Results in Sweave PDF report ?
Sweave rstudio
updated 10.0 years ago by ★ 8.2k • written 10.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Recent problem with biomaRt query
biomart biomaRt R rstudio
9.9 years ago nickp60 • 0
0
votes
3
replies
2.4k
views
Getting different results with DESeq2
deseq2 results rstudio
updated 9.8 years ago by 43k • written 9.8 years ago by ▴ 10
1
vote
3
replies
4.3k
views
Problem using display() function on RStudio
display rstudio annotationhub
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 10
2
votes
5
replies
5.9k
views
Update R in Rstudio to specific version 3.2.1 in windows
updateR rstudio Rversion3.2.1
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by ▴ 840
3
votes
7
replies
5.0k
views
goseq code after DESeq2 -NO IDEA!
goseq DESEQ2 RSTUDIO CODE
updated 9.5 years ago by ★ 13k • written 9.5 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Error viewing the data set Golub_Merge
golubEsets rstudio
updated 9.2 years ago by 68k • written 9.2 years ago by • 0
0
votes
1
reply
1.8k
views
Install Bioconductor package locally/temporarily
R rstudio package installation
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
2
votes
2
replies
4.5k
views
ColSideColors set by rows for heatmap.2 in RStudio
rstudio heatmap.2
updated 6.7 years ago by 68k • written 6.7 years ago by • 0
2
votes
1
reply
11k
views
Error: status was 'SSL connect error'
bioconductor proxy macOS R RStudio
updated 5.6 years ago by 25k • written 5.6 years ago by ▴ 20
0
votes
1
reply
1.2k
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 5.2 years ago by 4.1k • written 5.2 years ago by • 0
1
vote
7
replies
4.4k
views
Error with hclust
dendrogram hclust textanalysis R RStudio
4.1 years ago Abby ▴ 10
1
vote
3
replies
907
views
Pan-organism OrgDb database, Accession number translated to organism name in R
AccNo OrgDb convert Organismname RStudio
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
2.8k
views
Unable to Install packages in R
rstudio
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
4
replies
4.2k
views
transformation of csv file to fasta format with biostrings and r studio
DNASeq rstudio fasta Biostrings csv
3.7 years ago HELEN • 0
0
votes
1
reply
1.2k
views
Issue with installation of a package.
RStudio flowFDA
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
2
votes
3
replies
907
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
17 months ago R_Page • 0
0
votes
1
reply
1.2k
views
TFBSTools and readFASTA
TFBSTools DNASeqData readFASTA DNA RStudio
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
1
reply
1.3k
views
Bug: MOFA2 sets an environment variable that breaks knit in RStudio
RStudio MOFA2 bug knitr
updated 2.5 years ago by 68k • written 2.5 years ago by ▴ 430
5
votes
15
replies
17k
views
Can't able to install Seurat in Rstudio
Rstudio Seurat
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
1
vote
5
replies
3.1k
views
DESeq2: All samples have 0 counts for all genes. check the counting script
DESeq2 RStudio
3.6 years ago Sonia • 0
0
votes
14
replies
5.6k
views
GenomeInfoDbData had non-zero exit status
DESeq2 RStudio GenomeInfoDbData hadnon-zeroexitstatus
updated 2.6 years ago by • 0 • written 2.8 years ago by • 0
0
votes
1
reply
2.5k
views
DESeq2 error after installing BiocManager
scRNAseq RStudio DESeq2
updated 21 months ago by ★ 4.8k • written 21 months ago by • 0
4
votes
5
replies
3.2k
views
DESeq2::plotPCA plotting error
RStudio PCA DESeq2
written 3.0 years ago by • 0
0
votes
1
reply
696
views
FALSE error when checking a pre made sample data
Rstudio scRNAseq DESeq2
updated 21 months ago by ★ 4.8k • written 21 months ago by • 0
0
votes
2
replies
1.1k
views
Help Subsetting DDS for plotPCA for contrast groups
Rstudio plotPCA DESeq2
17 months ago yee • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Error in readCodelinkSet function by James W. MacDonald 68k
Please don't cross-post to Biostars. Either post here or there, but not both.
Comment: What happened to the Joost2016 dataset by shepherl 4.1k
what package is this function from and what did it do when it was working?
Comment: limma correction for tumor purity by gabriella.jacobson-eisenberg ▴ 20
Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…
Answer: Best tximport quant.genes.sf by ATpoint ★ 4.8k
The tx in the name stands for transcript. Gene level needs no tximport. You could simply use the standard output from salmon and do what th…
Comment: EuroBioC2023 abstract submission is open! by arden • 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
Votes
Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
Awards • All
Popular Question to gabriella.jacobson-eisenberg ▴ 20
Popular Question to nazaninhoseinkhan • 0
Popular Question to Gordon Smyth 52k
Popular Question to petergrahamclark • 0
Popular Question to atakanekiz ▴ 30
Locations • All
University of Chicago, 1 minute ago
Barcelona, Spain, 9 minutes ago
The Netherlands, 15 minutes ago
Pakistan, 36 minutes ago
France, 37 minutes ago
Traffic: 1072 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6