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software error
•
reset
0
votes
0
replies
796
views
Errors during KLD calculation with zero-count genes in DeMAND
software error
DeMAND
6.9 years ago
Jesse Dabney
• 0
0
votes
1
reply
2.6k
views
setup microbiome error
help
software error
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
mafusa20
• 0
1
vote
2
replies
1.7k
views
an error in the Venn Diagram creating
R
software error
6.9 years ago
morteza.hadizade
▴ 10
0
votes
0
replies
903
views
Error in base::strsplit(x, ...) : non-character argument
software error
r
readComp {systemPipeR}
6.9 years ago
catscampos
• 0
1
vote
1
reply
958
views
error during loading of minfi package
software error
6.9 years ago
sinha.puja
▴ 10
0
votes
1
reply
2.1k
views
topGO: "There are no adj nodes for node"
software error
topGO
org.hs.eg.db
6.9 years ago
natske
▴ 10
1
vote
12
replies
7.0k
views
Install rtracklayer with the Error undefined symbol: OPENSSL_init_ssl (system Centos7.3 R3.5.1 openssl-1.1.1)
software error
rtracklayer
bioconductor
openssl
7.0 years ago
ruan_wei_dong
• 0
2
votes
1
reply
1.5k
views
Bug in follow and precede
software error
genomicranges
iranges
updated 7.0 years ago by
Valerie Obenchain
★ 6.8k • written 7.0 years ago by
abc
• 0
0
votes
1
reply
1.4k
views
STRINGdb: enrichment function raises error
STRINGdb
stringdb
gene set enrichment analysis
software error
go
7.0 years ago
wsciekly.maciek
▴ 10
3
votes
3
replies
2.4k
views
GZIP ERROR:-2 using featureCounts (Subread)
software error
rnaseq
7.0 years ago
gbreard
▴ 10
0
votes
1
reply
3.8k
views
Timeout was reached error in GEOquery package
R
microarray
software error
updated 7.0 years ago by
Kevin Blighe
★ 4.0k • written 7.0 years ago by
morteza.hadizade
▴ 10
0
votes
7
replies
2.9k
views
DEXSeqHTML getListElement GRanges error
dexseq
software error
bug
updated 7.0 years ago by
nitesh.turaga
▴ 140 • written 7.0 years ago by
Lance Parsons
• 0
0
votes
5
replies
1.8k
views
Error in gmapR: gsnap not functioning
software error
gmapr
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Amer Ghalawinji
• 0
3
votes
9
replies
6.7k
views
topGO "invalid argument to unary operator"
software error
topgo
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
fshodan
• 0
1
vote
6
replies
12k
views
Cannot install Bioconductor Packages. Cannot install BiocManager.
software error
bioconductor
biocmanager
updated 7.0 years ago by
shepherl
4.2k • written 7.1 years ago by
reventropy2003
▴ 10
2
votes
4
replies
5.0k
views
Error in windows() function
software error
R
windows
updated 7.1 years ago by
Mike Smith
★ 6.6k • written 7.1 years ago by
a
• 0
0
votes
3
replies
1.8k
views
Error in makeTxDbFromBiomart
software error
txdb
maketxdbfrombiomart
7.1 years ago
katie_emelianova
• 0
0
votes
1
reply
574
views
Need update access to package "banocc"
software error
updated 7.1 years ago by
Mike Smith
★ 6.6k • written 7.1 years ago by
george.weingart
• 0
1
vote
7
replies
5.1k
views
DESEq2 Error in rownames<-(*tmp*, value = names(x))
software error
deseq2
updated 7.1 years ago by
Michael Love
43k • written 7.1 years ago by
ashley.doane
▴ 20
0
votes
1
reply
856
views
Ballgown for more than 2 group comaprison
stattest function error
software error
bioconductor
7.1 years ago
amy16
• 0
0
votes
2
replies
4.1k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 7.1 years ago by
Peter Langfelder
★ 3.0k • written 7.1 years ago by
giuseppe0525
• 0
0
votes
1
reply
1.2k
views
Error in data.frame for limmaCtData function
software error
limma
data.frame
updated 7.2 years ago by
Gordon Smyth
53k • written 7.2 years ago by
azmir004
• 0
0
votes
1
reply
2.3k
views
Issue using ballgown
software error
ballgown
genomeinfodbdata
genomeinfodb
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
dualeahmed
• 0
0
votes
3
replies
1.3k
views
uniprot.ws install error
software error
7.2 years ago
ghmdsr
• 0
0
votes
3
replies
1.9k
views
Gviz Alignment Tracks with non-UCSC reference chromosome names
gviz
software error
7.2 years ago
laura.k.hilton
• 0
0
votes
1
reply
994
views
question about DESeq2: getVarianceStabilizedData
deseq2
software error
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
miyouduniu
• 0
0
votes
1
reply
614
views
Help with DNA Methylation
software error
7.2 years ago
spbrackett20
• 0
1
vote
2
replies
1.9k
views
Problem installing ChAMP package.
software error
microarray
champ
methylation
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
cawten
▴ 10
1
vote
3
replies
2.0k
views
error installing org.Rn.eg.db
installation problem
software error
org.Rn.eg.db
updated 7.3 years ago by
James W. MacDonald
68k • written 7.3 years ago by
E.M. Lodder
▴ 40
0
votes
0
replies
957
views
How to fix the error in "meshes" package?
meshes
R
bioconductor
software error
7.3 years ago
mahmood.amiri225
• 0
0
votes
4
replies
2.9k
views
ChIPQC error: "non-zero exit status"
software error
package installation
chipqc
txdb.hsapiens.ucsc.hg18.knowngene
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
hallie.s
• 0
0
votes
1
reply
3.3k
views
TxDb.Hsapiens.UCSC.hg19.knownGen installation fail - non-zero exit status
software error
package installation
genomicfeatures
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
isultan
• 0
0
votes
1
reply
867
views
Why some packages don't work?
software error
bioconductor
affy
updated 7.4 years ago by
Axel Klenk
★ 1.1k • written 7.4 years ago by
marco.esposito
• 0
0
votes
0
replies
2.2k
views
ggbio Error: Don't know how to add o to a plot
software error
ggbio
ggplot2
7.4 years ago
zhe
▴ 20
0
votes
1
reply
1.4k
views
Unable to display image in browser from script
software error
R
ebimage
updated 7.4 years ago by
Andrzej Oleś
▴ 750 • written 7.4 years ago by
lsiemann
• 0
0
votes
1
reply
1.8k
views
rcorr problem of Hmisc package
hmisc
software error
updated 7.4 years ago by
shepherl
4.2k • written 7.4 years ago by
yueli7
▴ 20
0
votes
1
reply
3.6k
views
Error: vector memory exhausted (limit reached?)
software error
7.4 years ago
mdroog
▴ 10
0
votes
1
reply
2.1k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP
software error
installation
7.4 years ago
chxp
• 0
0
votes
0
replies
1.0k
views
CNSeg no method coercing S4 class to vector
software error
cntools
7.4 years ago
julianstanleya
• 0
0
votes
0
replies
551
views
Issue with isoPlot function in isomiRs package
software error
isoPlot function issue
isomiRs package
7.4 years ago
palbioinfor
• 0
0
votes
1
reply
1.5k
views
3.7 behaviour change with snplocs snpsById?
software error
snplocs
gpos
updated 7.5 years ago by
Hervé Pagès
16k • written 7.5 years ago by
j.abbott
• 0
2
votes
4
replies
1.5k
views
Problem in running DESeq2 in r
deseq2
DESeqDataSetFromMatrix
software error
updated 7.5 years ago by
Michael Love
43k • written 7.5 years ago by
nazaninhoseinkhan
• 0
2
votes
1
reply
2.6k
views
Error in TCGAquery of TCGAbiolinks Package
software error
bioconductor
tcgabiolinks
tcga
r
updated 7.5 years ago by
Benjamin Ostendorf
▴ 90 • written 7.5 years ago by
Beginner
▴ 60
0
votes
5
replies
2.0k
views
CSAW Spike In Normalization: Error in .local(object, ...) : library sizes of 'se.out' and 'object' are not identical
csaw
software error
R
chip-seq
bioconductor
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
94133
• 0
1
vote
7
replies
1.6k
views
Unable to move temporary installation R issue
software error
R
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
wkmustahs21
• 0
0
votes
2
replies
1.4k
views
Cannot get TxDb object using makeTxDbFromUCSC in any table:
software error
genomicfeatures
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
rmendez
• 0
2
votes
2
replies
1.6k
views
Queries around makeOrgPackageFromNCBI
R
software error
annotationforge
updated 7.6 years ago by
Guido Hooiveld
★ 4.1k • written 7.6 years ago by
laural710
• 0
0
votes
3
replies
2.2k
views
calculateRPKM error in customProDB
software error
customprodb
updated 4.0 years ago by
Anne
• 0 • written 8.3 years ago by
javamng
▴ 10
0
votes
0
replies
797
views
ChIPseaker getTagMatrix error
software error
bioconductor
7.6 years ago
sarit.weissmann5
• 0
0
votes
3
replies
2.4k
views
Error and warning message when reading the ballgown object
software error
illumina
DEG
ballgown
tuxedo
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
amy16
• 0
704 results • Page
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Answer: How can I correctly use phyloseq with Docker?
by
Kevin Blighe
★ 4.0k
The Bioconductor version must be compatible with the R version. Bioconductor version 3.18 is compatible with R version 4.3. The Dockerfile …
Answer: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace
by
Kevin Blighe
★ 4.0k
Your proposed code is correct and will achieve the desired outcome. The boolean filter expression `IFNg & TNFa | IFNg & IL2 | TNFa & IL2` i…
Answer: Install old version of DESeq2
by
Kevin Blighe
★ 4.0k
The Dockerfile that you have provided is appropriate for installing DESeq2 and apeglm from Bioconductor release 3.10, which corresponds to …
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The discrepancy between `final_exp1` and `final_exp2` could arise from several factors, despite matching dimensions. The `identical()` func…
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Hello Luna. The findUORFs function in ORFik identifies upstream open reading frames by extracting and concatenating the sequences of exo…
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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