User: Assa Yeroslaviz

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SingleR Seurat

updated 5 months ago by ATpoint ★ 4.1k • written 5 months ago by Assa Yeroslaviz ★ 1.5k

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2

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5.5k

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scoreMarkers scran

updated 10 months ago by Peter Hickey ▴ 740 • written 10 months ago by Assa Yeroslaviz ★ 1.5k

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2

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719

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scran Clustering SingleCell Normalization

13 months ago Assa Yeroslaviz ★ 1.5k

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4

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869

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DESeq2 SMART-seq

13 months ago Assa Yeroslaviz ★ 1.5k

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4

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1.5k

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diffSpliceDGE edgeR DifferentialSplicing

2.3 years ago Assa Yeroslaviz ★ 1.5k

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6

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2.3k

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subjunc edgeR

2.3 years ago Assa Yeroslaviz ★ 1.5k

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2

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856

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DifferentialSplicingWorkflow catchKallisto edgeR DifferentialSplicing

2.3 years ago Assa Yeroslaviz ★ 1.5k

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2

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929

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Views IRanges GRanges RleList

updated 2.6 years ago by Mike Smith ★ 6.5k • written 2.6 years ago by Assa Yeroslaviz ★ 1.5k

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2.1k

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Heatmap ComplexHeatmap colorRamp

3.1 years ago Assa Yeroslaviz ★ 1.5k

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8

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6.5k

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volcano-plot EnhancedVolcano

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.1 years ago by Assa Yeroslaviz ★ 1.5k

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2

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1.5k

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edger processamplicons sgrna crispr

updated 14 months ago by hyejo • 0 • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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3

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1.9k

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lfcshrink coef DESeq2

updated 2.5 years ago by Michael Love 41k • written 3.5 years ago by Assa Yeroslaviz ★ 1.5k

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676

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zinbwave PCA

3.6 years ago Assa Yeroslaviz ★ 1.5k

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4

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1.7k

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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1

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1.6k

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chipseeker Ensembl EnsDb.Mmusculus.v79 ensembldb

4.1 years ago Assa Yeroslaviz ★ 1.5k

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782

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SPIA functional-analysis Pathways KEGG

4.1 years ago Assa Yeroslaviz ★ 1.5k

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1

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25k

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lfcShrink contrast design deseq2

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by Assa Yeroslaviz ★ 1.5k

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3

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773

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rnaseqGene workflow deseq2

updated 4.3 years ago by Michael Love 41k • written 4.3 years ago by Assa Yeroslaviz ★ 1.5k

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1

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1.3k

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deseq2 design metadata

updated 4.3 years ago by sebastian.lobentanzer ▴ 50 • written 4.3 years ago by Assa Yeroslaviz ★ 1.5k

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limma linear mixed model voom rna-seq

4.7 years ago Assa Yeroslaviz ★ 1.5k

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3

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839

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deseq2 baseline LRT

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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10

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2.8k

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deseq2 time-series design matrix edger

updated 5.2 years ago by Michael Love 41k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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1

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739

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edger deseq2 interaction design matrix

updated 5.2 years ago by James W. MacDonald 65k • written 5.2 years ago by Assa Yeroslaviz ★ 1.5k

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9

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1.5k

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shrnaseq edger experimental design model.matrix

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Assa Yeroslaviz ★ 1.5k

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5

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3.9k

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genomicranges grangeslist bin findoverlaps

updated 5.5 years ago by Jenny HT Lee • 0 • written 6.7 years ago by Assa Yeroslaviz ★ 1.5k

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5

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1.1k

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deseq2 edgeR design matrix multifactorial design

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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790

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edger sgrna processamplicons

6.1 years ago Assa Yeroslaviz ★ 1.5k

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3

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3.0k

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deseq2 DESeqDataSetFromMatrix duplicate

updated 6.1 years ago by James W. MacDonald 65k • written 6.1 years ago by Assa Yeroslaviz ★ 1.5k

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11

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5.1k

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msaprettyprint() msa multiplealignment export

updated 6.3 years ago by UBod ▴ 290 • written 6.3 years ago by Assa Yeroslaviz ★ 1.5k

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2

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1.5k

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multiple factor design interactions design matrix deseq2

updated 6.5 years ago by Michael Love 41k • written 8.5 years ago by Assa Yeroslaviz ★ 1.5k

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900

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genomicranges iranges resize

6.5 years ago Assa Yeroslaviz ★ 1.5k

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7

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2.0k

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chipseq csaw limma design matrix multiple factor design

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Assa Yeroslaviz ★ 1.5k

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2.7k

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pheatmap kmeans

6.6 years ago Assa Yeroslaviz ★ 1.5k

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3

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6.9k

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deseq2 batch effect removebatcheffect() design matrix

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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1

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750

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deseq2 microarray nimblegene ratio limma

updated 6.6 years ago by Michael Love 41k • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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3

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1.2k

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Annotation CGH limma Annotation CGH limma

updated 6.6 years ago by Gordon Smyth 50k • written 11.8 years ago by Assa Yeroslaviz ★ 1.5k

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6

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6.0k

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genomicranges grangeslist dataframe irangeslist lists

updated 6.6 years ago by Michael Lawrence ★ 11k • written 6.6 years ago by Assa Yeroslaviz ★ 1.5k

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3

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2.0k

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genomicranges subsetbyoverlaps granges findoverlaps

6.7 years ago Assa Yeroslaviz ★ 1.5k

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3

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3.9k

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genomicranges genomicfeatures granges subsetting

6.7 years ago Assa Yeroslaviz ★ 1.5k

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15

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3.0k

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bigwig rtracklayer import granges grangeslist

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by Assa Yeroslaviz ★ 1.5k

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1.1k

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monocole memory CellDataSet

7.0 years ago Assa Yeroslaviz ★ 1.5k

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1.1k

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monocole single-cell rstudio

7.0 years ago Assa Yeroslaviz ★ 1.5k

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9

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3.8k

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biomart host connection

updated 7.1 years ago by Mike Smith ★ 6.5k • written 7.1 years ago by Assa Yeroslaviz ★ 1.5k

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3

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1.9k

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sc3 scater scRNAseq

updated 7.2 years ago by Vladimir Kiselev ▴ 150 • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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3

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1.6k

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dexseq differential exon usage

updated 7.2 years ago by mat.lesche ▴ 90 • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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826

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junctionseq relevel reference

7.2 years ago Assa Yeroslaviz ★ 1.5k

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5

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1.9k

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sc3 scater single-cell single cell

updated 7.2 years ago by Vladimir Kiselev ▴ 150 • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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943

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junctionseq qorts multiple factor design relevel

7.2 years ago Assa Yeroslaviz ★ 1.5k

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1

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1.5k

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genomicranges iranges featurecounts counts rnaseq

updated 7.2 years ago by Hervé Pagès 16k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k

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11

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4.3k

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deseq2 LRT timecourse

updated 2.1 years ago by Michael Love 41k • written 7.2 years ago by Assa Yeroslaviz ★ 1.5k