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GO/KEEG enrichment for non-model bacteria - help for beginner
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5.7 years ago liz.marjory • 0
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Deseq2 how to get input data for plotCounts for a single gene
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updated 5.7 years ago by 1.6k • written 5.7 years ago by ★ 1.1k
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keytype not supported in clusterprofiler when it is ensembl IDs?
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News: Final List of Deprecated Packages for Bioc3.11
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updated 5.7 years ago by ▴ 160 • written 5.8 years ago by 4.3k
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5.7 years ago kayla.interdonato ▴ 160
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A warning : stop codons that cannot be mapped to an exon in using makeTxDbFromGFF
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5.7 years ago Guandong Shang ▴ 40
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Where to file data for RNA-seq workflow: gene-level exploratory analysis and differential expression?
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Relations used in GO.db GOBPANCESTOR
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Partial NA coefficients for 10 probe(s) Limma
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Updating Gene Annotation in GeneSetCollection {GSEABase}
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5.7 years ago Thomas Maurel ▴ 800
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Merging and Aligning LC-MS/MS Data With XCMS (multiple scan ranges/polarities)
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ComplexHeatmap - R Session aborted after calling Heatmap()
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Adding quadGate.tmix to gating set with gs_pop_add
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updated 5.7 years ago by ▴ 310 • written 5.7 years ago by ▴ 30
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Passing truncate_max_range=FALSE to read.ncdfFlowSet
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updated 5.7 years ago by ▴ 310 • written 5.7 years ago by ▴ 30
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gene enrichment using enrichGO function throuth annotationHub orgDb
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updated 5.7 years ago by 68k • written 5.7 years ago by • 0
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gcrma problem with make.cdf.package
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Massive L2FC in DESeq2
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5.7 years ago Alex • 0
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Converting numeric variables to factors in DESeq metadata
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function plotgenomicregions does not appear in the aspli package installed in windows
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5.7 years ago joanmarquez21 • 0
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How to load counts from existing count matrices in diffHic package
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Ashr error: Optimization failed to converge. Results may be unreliable. Try increasing maxiter and rerunning.
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5.7 years ago kavator ▴ 30
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News: Bioconductor 3.11 is Released!
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5.7 years ago shepherl 4.3k
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SingleR analysis with integrated data
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Error in dbCreator function at PGA package
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Cannot extract size factor from DESeq2 analysis
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updated 7 months ago by 43k • written 5.7 years ago by • 0
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How to interpret coefficients of time course modeled data with DESeq2?
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gene ID conversion
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updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 60
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DEXseq conversion of GTF to GFF creating incorrect exon coordinates
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5.7 years ago knuppdav • 0
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0
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enrichplot pakage no output plot
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5.7 years ago Hamidreza Hashemi ▴ 20
1
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2.3k
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EDASeq gene length normalization
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updated 5.7 years ago by ★ 4.0k • written 5.7 years ago by • 0
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Method and kcdf arguments in gsva package
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having trouble formatting data for DE analysis
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updated 5.7 years ago by 43k • written 5.7 years ago by • 0
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Error with makeTxDbFromBiomart
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0
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Filter by colData value
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updated 5.7 years ago by ▴ 50 • written 5.8 years ago by • 0
46,726 results • Page 168 of 935
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Comment: limpa analysis advice by Gordon Smyth 53k
Yes, we use Astral currently. The main dataset in the limpa preprint is Astral. I don't see any major problems with your data and I think …
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Thank you for your comments. Please note that I did not apply any filtering to the peptide intensity. The experimental protocol includes tw…
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Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
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Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
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Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
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Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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