0
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2
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1.5k
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flowCore: retain raw data in the flowset after transformation
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updated 7.1 years ago by ★ 1.3k • written 7.1 years ago by • 0
2
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motifDb PFM vs JASPAR database PFM: conversion to PWM
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updated 7.1 years ago by 0 • written 7.2 years ago by ▴ 50
2
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2
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Error in installation of scran
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updated 7.1 years ago by ★ 29k • written 7.1 years ago by • 0
0
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9
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3.0k
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DESeq2 only runs interaction factor x continuous variable with old not new version
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updated 7.1 years ago by 0 • written 9.9 years ago by ▴ 10
0
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1
reply
802
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The number of the counts columns uploaded to the Deseq2 affected the number of reported DEG
deseq2
7.1 years ago naktang1 • 0
0
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2
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Can logFC be used to determine effect size?
updated 7.1 years ago by 0 • written 12.5 years ago by ★ 13k
0
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952
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How to interpret difference statistic from the output of the motifDiffEnrichment() function in the PWMEnrich package?
PWMEnrich
7.1 years ago intregen • 0
1
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2
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alpha and p-adjust value
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updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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updated 7.1 years ago by 53k • written 7.1 years ago by • 0
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2
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DESeq2: qualitatively different results between deseq2 v1.14 and deseq2 v1.22 when run with shrinkage
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updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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3
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updated 7.1 years ago by 0 • written 7.2 years ago by • 0
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1
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DEBrowser shiny - Maximum upload size exceeded - error
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7.1 years ago tomasfly • 0
0
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2
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2.2k
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Solexa fastq files and BLAT
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updated 7.1 years ago by 0 • written 17.1 years ago by ★ 1.9k
3
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3
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Correcting the batch effect in Edgeseq data
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updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 20
0
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1
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1.1k
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RUV integration in DESeq2 design
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updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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Tumor subtype classification when genes of gene set are missing from samples - GSVA approach
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7.1 years ago Pietro ▴ 40
0
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1
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920
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DeepBlueR - query all annotations across region
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updated 7.1 years ago by 0 • written 7.1 years ago by ▴ 470
0
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14
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7.1 years ago vivekr • 0
12
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4
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differential expression analysis of htseq data with edgeR/voom
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updated 7.1 years ago by 53k • written 8.7 years ago by ▴ 30
0
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3
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1.8k
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ChIPQC ERROR with "subscript out of bounds"
chipqc
7.1 years ago Chevy Xu • 0
1
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12
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3.4k
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avereps with probes mapping to multiple genes (Agilent dual color microarray)
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updated 7.1 years ago by 53k • written 7.1 years ago by ▴ 30
0
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2
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MeSH enrichment analysis with "meshes"
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7.1 years ago ayatrience • 0
7
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8
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R failing to load genome files from EnsDb.Hsapiens.v86
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updated 7.1 years ago by 0 • written 7.2 years ago by ▴ 20
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Error: record does not start with '@'
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updated 7.1 years ago by 68k • written 7.1 years ago by • 0
1
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1
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ChIPseeker genomicAnnotationPriority
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updated 4.5 years ago by • 0 • written 7.1 years ago by ▴ 10
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updated 7.1 years ago by 68k • written 7.1 years ago by • 0
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setup microbiome error
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updated 7.1 years ago by 25k • written 7.1 years ago by • 0
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Data preparation and Machine learning on time course RNAseq data
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7.1 years ago A ▴ 60
0
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3
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updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 40
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Biseq installation error
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updated 7.1 years ago by 25k • written 7.1 years ago by • 0
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MDS Plot help in edgeR
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updated 7.1 years ago by 53k • written 7.1 years ago by • 0
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7.1 years ago DannyM • 0
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GeneGA Error Message
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7.1 years ago coyoung ▴ 10
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7.1 years ago James W. MacDonald 68k
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0
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7.1 years ago tohsumi • 0
9
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7
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WGCNA: relate modules to binary trait
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updated 7.1 years ago by ▴ 30 • written 7.1 years ago by ▴ 50
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scran/scater Normalized matrix
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updated 7.1 years ago by ★ 29k • written 7.1 years ago by ▴ 90
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7.1 years ago shepherl 4.3k
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genefilter Package not available for R 3.5.2
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7.1 years ago radhikasundar520 • 0
3
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Job: Postdoctoral Scientist position at intersection of Single-Cell Cancer Genomics, Data Science and Bioconductor Software Development
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7.1 years ago Stephanie Hicks ▴ 80
0
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1
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680
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Unusual DESeq2 results
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updated 7.1 years ago by 43k • written 7.1 years ago by • 0
1
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1
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PLAGE method fails in GSVA if an overlap between gene sets and genes in expressions is less than two
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7.1 years ago krassowski.michal ▴ 40
0
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2
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808
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updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 10
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4
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Interpretation of logFC and pvalues: LRT vs Wald tests in DESeq2
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updated 7.1 years ago by 43k • written 7.1 years ago by • 0
1
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2
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an error in the Venn Diagram creating
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7.1 years ago morteza.hadizade • 0
0
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0
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DEXSeq: How to reduce compute time for estimating dispersions for large datasets.
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7.1 years ago mjrarcher ▴ 10
0
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2
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1.2k
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Collapse Replicates effect on heat map construction
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updated 7.1 years ago by 43k • written 7.1 years ago by ▴ 10
0
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0
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GDC RNA seq files (replicates?)
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7.1 years ago coyoung ▴ 10
46,742 results • Page 233 of 935
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Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
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Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
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thanks for sharing!!! https://cran.r-project.org/
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Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
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Answer: Are transformed values from rlog /vst log2 normalized counts?
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