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0
votes
1
reply
1.8k
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NAs with rawCopynumber() and discrepancies with estimated computed in parallel
crlmm
copynumber
10.8 years ago
kforner
• 0
2
votes
1
reply
1.8k
views
rhdf5 segmentation error with vdata
rhdf5
updated 10.8 years ago by
Bernd Fischer
▴ 550 • written 10.8 years ago by
sa.cizmeli
• 0
4
votes
2
replies
1.3k
views
Creating all possible k combinations of n objects with a constraint for large n
base
10.8 years ago
mrk.carty
▴ 30
3
votes
5
replies
2.4k
views
help! new to R! Detection p value cut off
p values
microarray
FDR
10.8 years ago
a
• 0
0
votes
2
replies
1.8k
views
camera.DGEList causes Error in qr.qty(QR, t(y)) : NA/NaN/Inf in foreign function call
edgeR
updated 10.8 years ago by
Aaron Lun
★ 29k • written 10.8 years ago by
Cei Abreu-Goodger
▴ 830
2
votes
4
replies
6.8k
views
T-test for microarray data
limma
microarray
t.test
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
eslamias
• 0
1
vote
4
replies
4.1k
views
GeneChip Human Transcriptome Array 2.0 analysis in R for identifying possible differential exon splicing events
affymetrixchip
GenechipHumanTranscriptomeArray2.0
exon array analysis
10.8 years ago
svlachavas
▴ 840
0
votes
2
replies
2.1k
views
Affymetrix file with probe set id
probe
affy
PROcess
probe
affy
PROcess
updated 10.8 years ago by
nazaninhoseinkhan
• 0 • written 21.3 years ago by
Srinivas Iyyer
▴ 600
18
votes
17
replies
5.6k
views
How to model a comparison between comparisons in edgeR?
edger
rnaseq
updated 10.8 years ago by
Ryan C. Thompson
★ 7.9k • written 10.8 years ago by
Nick N
▴ 60
2
votes
5
replies
2.9k
views
convert GAlignmentPairs to GAlignment
GAlignmentPairs
galp2gal
RIPSeeker
10.8 years ago
tomas.bjorklund
▴ 20
0
votes
0
replies
1.9k
views
News:
4 days left to register for a short course on computational proteomics
proteomics
news
course
massspectrometry
News
10.8 years ago
Olga Vitek
▴ 40
0
votes
5
replies
3.6k
views
Problem Importing STAR fusion data into chimera
fusion genes
chimera
star
updated 10.8 years ago by
richa_r
• 0 • written 11.2 years ago by
am26
• 0
0
votes
1
reply
5.2k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 10.8 years ago by
Pan Du
▴ 80 • written 10.8 years ago by
andrew.j.skelton73
▴ 370
0
votes
3
replies
2.1k
views
Genes corresponding to GO terms for unsupported organsims
gostats
unsupported organisms
updated 10.8 years ago by
Marc Carlson
★ 7.2k • written 10.8 years ago by
Krys Kelly
▴ 270
0
votes
4
replies
2.1k
views
Problems loading deepSNV and associated libraries in bioconductor
deepsnv
updated 10.8 years ago by
Valerie Obenchain
★ 6.8k • written 10.8 years ago by
shpak.max
• 0
0
votes
0
replies
2.5k
views
Job:
Abbvie -- Senior Manager/Associate Director, Exploratory Statistics
genomics
genetics
proteomics
rnaseq
microarray
Job
10.8 years ago
Feng Hong
• 0
0
votes
3
replies
3.3k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
10.8 years ago
alakatos
▴ 130
0
votes
5
replies
2.6k
views
Error installing VariantAnnotation with bioconductor/devel_core
install
variantannotation
10.8 years ago
kforner
• 0
3
votes
4
replies
1.7k
views
Problem with scanBam
scanBam
scanbamparam
updated 10.8 years ago by
Martin Morgan
25k • written 10.8 years ago by
felix.klein
▴ 150
0
votes
1
reply
1.7k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
10.8 years ago
Martin Morgan
25k
4
votes
1
reply
3.3k
views
OFFICIAL_GENE_SYMBOL not an available idType in RDAVIDWebService
rdavidwebservice
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
chang02_23
▴ 30
0
votes
1
reply
1.3k
views
error with spliceR/cummberbund reading GTF file
software error
10.8 years ago
knight2ni
• 0
0
votes
3
replies
3.0k
views
Problem with reading raw Illumina Human HT-12 v4 data using beadarray
beadarray
readIllumina
10.8 years ago
jaro.slamecka
▴ 140
4
votes
4
replies
5.9k
views
Rsubread installation issues
rnaseq
10.8 years ago
lshepard
▴ 40
2
votes
7
replies
3.4k
views
Removing samples from S4 object (in lumi)
lumi
S4
10.8 years ago
Chi Hong
• 0
0
votes
11
replies
2.7k
views
FourCseq - error ountFragmentOverlaps()
fourcseq
10.8 years ago
samuel collombet
▴ 140
1
vote
5
replies
1.9k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 10.8 years ago by
Pan Du
▴ 80 • written 10.8 years ago by
andrew.j.skelton73
▴ 370
0
votes
1
reply
2.1k
views
Adding Phenodata after processing in Lumi
PROcess
lumi
PROcess
lumi
updated 10.8 years ago by
Chi Hong
• 0 • written 14.5 years ago by
Marino, Rebecca Bosko
▴ 10
0
votes
0
replies
1.3k
views
Problem with gene annotation used in chimera package for fusion analysis
chimera package
fusion genes
annotation
10.8 years ago
richa_r
• 0
0
votes
10
replies
3.0k
views
Error when using readIDAT() from illuminaio
illuminaio
idat
10.9 years ago • updated 10.8 years ago
lacion
• 0
4
votes
8
replies
4.7k
views
Visualising effects of observation/sample weights in differential expression analysis
limma
voom
sva
edgeR
updated 10.8 years ago by
Matthew Ritchie
▴ 1000 • written 10.9 years ago by
m.fletcher
▴ 20
1
vote
5
replies
2.5k
views
CRLMM on Illumina Human1Mv1_C chips
crlmm
illumina
beadarraysnp
updated 10.8 years ago by
Matthew Ritchie
▴ 1000 • written 10.8 years ago by
René
▴ 40
0
votes
1
reply
1.5k
views
reference manual "IlluminaHumanMethylation450kanno.ilmn12.hg19"
IlluminaHumanMethylation450kanno.ilmn12.hg19
10.8 years ago
richa.gupta
• 0
8
votes
4
replies
6.1k
views
limma - F-test for many condition
limma
F-test
10.9 years ago • updated 10.8 years ago
samuel collombet
▴ 140
0
votes
11
replies
4.7k
views
Missing data after BiomaRt query
biomart
bioconductor
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
elodie.chapeaublanc
• 0
0
votes
2
replies
1.7k
views
DESEQ2 Gives Same Log2FC Across Multiple Sample Comparisons
deseq2
10.8 years ago
gokhulkrishnakilaru
• 0
0
votes
2
replies
2.3k
views
retrieve kegg pathway abundances from gage analysis
gage
pathways
kegg
updated 10.8 years ago by
Luo Weijun
★ 1.6k • written 10.9 years ago by
francesca.defilippis
▴ 100
0
votes
3
replies
3.2k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq
Bsmooth
updated 2.2 years ago by
Adam
• 0 • written 10.8 years ago by
unmeshj
• 0
0
votes
1
reply
2.0k
views
Job:
Bioinformatics Post-Doc Positions
cancer
BIOINFORMATICS
genomics
RNAseq
miRseq
Job
10.8 years ago
aaron
• 0
0
votes
0
replies
2.1k
views
Job:
Services/Outreach orientend bioinformatics positions at EMBL - Heidelberg
EMBL
services
workflows
training
Job
10.8 years ago
Wolfgang Huber
★ 13k
1
vote
2
replies
1.5k
views
problem of codelink
codelink
updated 10.8 years ago by
Diego Diez
▴ 760 • written 10.8 years ago by
fang_zhuo
▴ 10
5
votes
6
replies
2.2k
views
Cannot find function treatDGE() in package edgeR?
edger
installation
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
ejliaw
• 0
1
vote
2
replies
2.5k
views
Deconvolution RNA-Seq data
rna-seq
differential expression
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
carleshf
▴ 10
0
votes
1
reply
1.6k
views
riboSeqR: criteria used to determine reading frames
riboSeqR
updated 10.8 years ago by
Thomas J Hardcastle
▴ 180 • written 10.9 years ago by
antonvila.s
• 0
0
votes
1
reply
1.4k
views
riboSeqR: plotTranscript function not showing coverage
riboseqr
updated 10.8 years ago by
Thomas J Hardcastle
▴ 180 • written 10.9 years ago by
antonvila.s
• 0
2
votes
11
replies
20k
views
logfoldStandard Error and wald-statistics in DESeq2 results
deseq2
wald
updated 4.2 years ago by
Michael Love
43k • written 10.8 years ago by
deena
▴ 20
2
votes
20
replies
6.4k
views
Important r packages not available for R version 3.1.1
exonmap
exon array analysis
bioconductor
10.9 years ago • updated 10.8 years ago
svlachavas
▴ 840
0
votes
3
replies
2.1k
views
problem with update limma - green channel missing
limma
bioconductor
read.maimages
agilent
8x60K
10.9 years ago
wd
▴ 30
5
votes
8
replies
2.6k
views
Missing mm10 in geneLenDataBase
geneLenDataBase
mm10
updated 10.9 years ago by
Hervé Pagès
16k • written 10.9 years ago by
Robert K. Bradley
▴ 40
0
votes
1
reply
1.5k
views
MAIT - suppress interactive mode
mait
metabolomics
updated 10.9 years ago by
Dan Tenenbaum
★ 8.2k • written 10.9 years ago by
dilara.ally
• 0
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