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6.6 years ago eshelden ▴ 40
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champ.runCombat is failing: "invalid 'row.names' length"
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5.0 years ago z.navidi90 ▴ 10
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DEX-Seq returns Error in FUN(X[[i]], ...) : subscript out of bounds when I use DEXSeqDatasetFromHTseq()
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Automatic color assignment for annotations on ComplexHeatmap
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TwoSampleMR and ieugwasr
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5.8 years ago 94133 • 0
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Export from limma, edit, import to same class
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8.8 years ago jjotto • 0
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9.1 years ago tina.khajeh • 0
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Error in installing multiClust package
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updated 2.5 years ago by • 0 • written 7.3 years ago by ★ 1.5k
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Error with R package curatedTCGAData while trying to download TCGA MultiAssayExperiments
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3.5 years ago svlachavas ▴ 830
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why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
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3
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Surrogate variable analysis for paired RNA seq experiment
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please someone help me to run this code
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GEOquery:Get error sampleNames
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8.5 years ago svlachavas ▴ 830
3
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Function 'sexp_as_cholmod_sparse' doesn't exist in the package 'Matrix'
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3
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IHW: retain annotation columns in data when running `ihw(pvalue ~ covariate, data = ...)`
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Error in ChemmineR function propOB() and ChemmineOB prop_OB()
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Problems installing Bioconductor -- pbkrtest
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8.5 years ago codefused ▴ 30
3
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ChIPQC 'Contigs of interest are not all in Bam file!!' error
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3.0 years ago Jonah ▴ 20
1,000 results • Page 2 of 20
Recent ...
Replies
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by Wei Shi ★ 3.6k
Your bam file names should be stored in a vector and then provided to the `files` parameter.
Comment: Volcano plot of scRNA-seq data not "centered" by Michael Love 42k
Agree with @atpoint Depending on the "groups" in single cell, the question of DE can be not well defined without inserting additional inf…
Answer: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k
Sounds like a normalization problem, but I am not sure how to help with that. Indeed you can use control genes, for example use the top 20%…
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by ATpoint ★ 4.2k
I was talking about the command line version.
Comment: Using featureCounts with SAF annotation file gives "Error: only GTF files contai by atan • 0
I tried reading in the .csv version of the SAF with header = F and I'm still getting an error. I'm running: ``` counts <- featureCounts( …
Votes
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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