Bioconductor Installation

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by hong • 0

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BiocManager installation GEOquery

updated 21 months ago by Basti ▴ 780 • written 21 months ago by surinder.chd90 • 0

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installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb

22 months ago elmfinds • 0

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rtracklayer GenomicRanges Installation

updated 22 months ago by James W. MacDonald 65k • written 22 months ago by Johanna • 0

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GRanges packages installation

updated 24 months ago by shepherl 3.8k • written 24 months ago by Eli • 0

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package symlinks directories installation Dropbox

updated 2.1 years ago by Hervé Pagès 16k • written 2.1 years ago by jose ▴ 10

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packages installation Bioconductor updating

updated 2.1 years ago by Marcel Ramos 690 • written 2.1 years ago by jose ▴ 10

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Installation

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by dmahoney • 0

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apple m1 installation silicon

updated 2.3 years ago by Gordon Smyth 50k • written 2.8 years ago by Brian ▴ 90

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DESeq2 Problem installation with

updated 2.8 years ago by Lluís Revilla Sancho ▴ 730 • written 2.8 years ago by Nahid • 0

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hdf5r installation

updated 2.8 years ago by Hervé Pagès 16k • written 2.8 years ago by snp31 • 0

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Installation

updated 2.8 years ago by James W. MacDonald 65k • written 2.8 years ago by gray • 0

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macos installation

updated 3.0 years ago by Kevin Blighe ★ 3.9k • written 3.0 years ago by Joe ▴ 10

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scran installation

3.2 years ago TJ • 0

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installation time machine mran rspm

updated 3.7 years ago by Martin Morgan 25k • written 3.7 years ago by Michael Steinbaugh ▴ 90

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deseq2 bioconductor windows xml installation

updated 3.8 years ago by Michael Love 41k • written 3.8 years ago by sarah3 • 0

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ensembldb package installation BiocManager

updated 3.8 years ago by Kevin Blighe ★ 3.9k • written 3.8 years ago by dylangagler • 0

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Installation Packages Missing

updated 3.8 years ago by Laurent Gatto 1.6k • written 4.0 years ago by sreedta8 ▴ 10

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bioconductor installation proxy BiocManager

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by chen • 0

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DelayedArray warning installation

updated 3.9 years ago by Hervé Pagès 16k • written 3.9 years ago by inzirio ▴ 10

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Installation

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by terrylthomas2804 • 0

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installation permission denied RTCGAToolbox TCGAbiolinks

4.0 years ago julia.tutzauer • 0

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R installation packages annotatr biocmanager

4.1 years ago dakarai_esgdaille ▴ 10

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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packages installation GenomeGraphs

updated 4.2 years ago by James W. MacDonald 65k • written 4.2 years ago by alex • 0

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software error installation

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by GENOMIC_region • 0

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goseq installation

4.3 years ago gdalsky ▴ 40

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newpackage vignette installation

updated 4.5 years ago by shepherl 3.8k • written 4.5 years ago by Krutik Patel ▴ 10

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Rhtslib installation error zlib

updated 4.6 years ago by leoadam014 • 0 • written 5.5 years ago by boboshaq • 0

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Genesis Installation

updated 4.7 years ago by Mike Smith ★ 6.5k • written 4.7 years ago by winstondunnmd ▴ 10

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flowCore Installation dependency

updated 4.9 years ago by Jake Wagner ▴ 310 • written 4.9 years ago by Robert Baer ▴ 70

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987

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ChemmineOB Linux Installation

5.1 years ago jandrosavich • 0

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installation

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by thatwasfunny • 0

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installation biocmanager

updated 5.5 years ago by shepherl 3.8k • written 5.5 years ago by Michael Steinbaugh ▴ 90

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biocmanager installation

5.6 years ago Kyle Johnsen ▴ 30

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biocinstaller custom library path installation package installation

updated 5.6 years ago by James W. MacDonald 65k • written 5.6 years ago by ariel ▴ 20

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delayedarray bug installation

updated 5.7 years ago by Martin Morgan 25k • written 5.8 years ago by simon.andrews • 0

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ChAMP software error installation

5.9 years ago chxp • 0

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installation minfi bumphunter

updated 6.0 years ago by Peter Hickey ▴ 740 • written 6.0 years ago by muellerf • 0

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installation

6.0 years ago xinfu.xia • 0

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rhstlib installation compilation error

6.0 years ago Ryan C. Thompson ★ 7.9k

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1.7k

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installation phyloseq

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by layeb • 0

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bioconductor biocinstaller installation conda

6.2 years ago jol.espinoz ▴ 40

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bioclite package installation installation install

updated 6.2 years ago by Mike Smith ★ 6.5k • written 6.2 years ago by cristian ▴ 10

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ubuntu installation

updated 6.3 years ago by Martin Morgan 25k • written 6.3 years ago by Deleted ▴ 70

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goseq installation

updated 6.4 years ago by Martin Morgan 25k • written 6.4 years ago by philipp.voss • 0

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installation CardinalWorkflows Imaging mass spectrometry Cardinal

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by xander.spotbeen • 0

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biocinstaller root installation installation problem

6.5 years ago charles.tilford ▴ 10

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phyloseq installation ade4 macos

6.5 years ago sprague • 0

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installation

updated 6.5 years ago by Cheng-Yuan Kao ▴ 100 • written 8.7 years ago by seeker • 0

50 results • Page 1 of 1

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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0

Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…

Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Votes

Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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