Showing : Statistics • reset
10
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14
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15k
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how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 4.2 years ago by ▴ 20 • written 9.3 years ago by ▴ 30
28
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7
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13k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 19 months ago by ▴ 10 • written 7.6 years ago by ▴ 40
19
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4
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9.3k
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Confidence intervals on edgeR logFC
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updated 9.1 years ago by • 0 • written 10.7 years ago by ▴ 40
2
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2
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9.1k
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
8.5 years ago • updated 8.4 years ago jol.espinoz ▴ 40
8
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8
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8.5k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.7 years ago by ★ 7.9k • written 6.7 years ago by ▴ 60
0
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4
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6.1k
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10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 8.9 years ago by 43k • written 8.9 years ago by • 0
2
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2
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4.2k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.6 years ago by 52k • written 5.6 years ago by ▴ 10
8
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3
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3.9k
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Differing topTable() results with Limma with and without specifying coefficient
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updated 9.1 years ago by 52k • written 9.1 years ago by • 0
1
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6
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3.5k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 2.2 years ago by 43k • written 6.4 years ago by • 0
0
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4
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3.4k
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XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
9.4 years ago Titan • 0
1
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2
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3.1k
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the statistical test that DESeq2 use
deseq2 statistics
updated 8.3 years ago by ★ 7.9k • written 8.3 years ago by • 0
1
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1
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3.0k
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 2.1 years ago by ★ 4.8k • written 2.1 years ago by ▴ 10
3
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0
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2.7k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.5 years ago • updated 5.4 years ago Gordon Smyth 52k
1
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2
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2.3k
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how to perform pre ranked GSEA in R?
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updated 8.2 years ago by • 0 • written 10.2 years ago by ▴ 80
1
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0
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2.3k
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Job: Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job rnaseq statistics systemsbiology Job
10.0 years ago Federico Marini ▴ 180
0
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2.2k
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Job: Full position as Statistician at ETH Zurich in Personalized Medicine Consultancy/Data Analysis
statistics consultancy personalized medicine Job
10.6 years ago Daniel Stekhoven ▴ 10
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
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0
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2.1k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
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8.7 years ago Wolfgang Huber ★ 13k
0
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0
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2.1k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
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9.1 years ago • updated 8.8 years ago clif.duhn • 0
1
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0
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2.0k
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News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
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10.6 years ago gagneur ▴ 10
0
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3
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2.0k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 3.2 years ago by 21k • written 3.3 years ago by ▴ 10
3
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3
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1.9k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 6.0 years ago by 43k • written 6.0 years ago by • 0
0
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3
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1.9k
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batch effect in EPIC array data
statistics Epigenetics R
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by ▴ 10
2
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3
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RNAseq outlier is a critical sample
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updated 9.0 years ago by 52k • written 9.0 years ago by • 0
0
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.3 years ago • updated 8.1 years ago Luo Weijun ★ 1.6k
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
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9.2 years ago Hui Sun Leong ▴ 10
1
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Job: PhD Positions in Computational Cancer Research
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8.5 years ago Bernd Fischer ▴ 550
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regression analysis for epic array methylation data using limma
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3.0 years ago Jitendra ▴ 10
0
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Job: Come apply for our Epidemiologist, AncestryHealth role
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9.9 years ago careers • 0
3
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5
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P adjusted values in Deseq2
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written 4.4 years ago by • 0
1
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4
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
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6.8 years ago • updated 6.7 years ago Andrea Carenzo • 0
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2
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Compute test-score statistical significance using control-scores from shuffled population
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9.2 years ago Bade ▴ 310
1
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2
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Re-calculation of Padj (P adjusted value)
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updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 60
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.6 years ago by ★ 13k • written 7.6 years ago by ▴ 90
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DSS DMLTest Prior Estimate of theta dispersion
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7.1 years ago floriandeckert ▴ 30
0
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0
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0
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1
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Job: Statistical Research Associate
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7.1 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.4k
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
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8.6 years ago mmartin ▴ 20
0
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0
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.6 years ago rbronste ▴ 60
0
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2
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comparing two GOstats result lists
gostats statistics
updated 7.0 years ago by 68k • written 7.0 years ago by ▴ 30
0
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0
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
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7.2 years ago kieranrcampbell ▴ 50
0
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Job: Proteomics Bioinformatician
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4.4 years ago Laura • 0
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5
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Comparing sets of differentially expressed genes
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9.6 years ago sunkid • 0
0
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0
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3.6 years ago • updated 2.3 years ago Wolfgang Huber ★ 13k
2
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limma for gene expression analysis with big and unbalanced sample size
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updated 12 months ago by • 0 • written 9.0 years ago by • 0
0
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0
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Proteomics data analysis with DEP no replicates
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5.8 years ago tatabox • 0
50 results • Page 1 of 1
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Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin by ATpoint ★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr by caroline.zanchi ▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr by Gordon Smyth 52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi by Gordon Smyth 52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Comment: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm by James W. MacDonald 68k
Probably not. Any given gene may be appended with many different GO terms, so you would end up with something that is not very useful. ``…
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Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
Answer: Adding gene names as row annotations to an RNAseq heatmap made with ComplexHeatm
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