Showing : Statistics • reset
10
votes
14
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13k
views
how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 3.4 years ago by ▴ 20 • written 8.5 years ago by ▴ 30
27
votes
7
replies
11k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 9 months ago by ▴ 10 • written 6.8 years ago by ▴ 40
19
votes
4
replies
8.4k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 8.3 years ago by • 0 • written 9.8 years ago by ▴ 40
2
votes
2
replies
8.0k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
7.6 years ago jol.espinoz ▴ 40
8
votes
8
replies
7.1k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.8 years ago by ★ 7.9k • written 5.8 years ago by ▴ 60
0
votes
4
replies
5.7k
views
10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 8.1 years ago by 42k • written 8.1 years ago by • 0
8
votes
3
replies
3.3k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 8.3 years ago by 51k • written 8.3 years ago by • 0
2
votes
2
replies
3.1k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.8 years ago by 51k • written 4.8 years ago by ▴ 10
0
votes
4
replies
2.9k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
8.6 years ago Titan • 0
1
vote
6
replies
2.9k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 17 months ago by 42k • written 5.6 years ago by • 0
1
vote
2
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2.8k
views
the statistical test that DESeq2 use
deseq2 statistics
updated 7.5 years ago by ★ 7.9k • written 7.5 years ago by • 0
3
votes
0
replies
2.3k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.7 years ago • updated 4.6 years ago Gordon Smyth 51k
1
vote
2
replies
2.1k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.4 years ago by • 0 • written 9.4 years ago by ▴ 80
1
vote
0
replies
2.1k
views
Job: Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job rnaseq statistics systemsbiology Job
9.2 years ago Federico Marini ▴ 180
0
votes
0
replies
2.0k
views
Job: Full position as Statistician at ETH Zurich in Personalized Medicine Consultancy/Data Analysis
statistics consultancy personalized medicine Job
9.8 years ago Daniel Stekhoven ▴ 10
0
votes
0
replies
2.0k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.0 years ago • updated 3.7 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
2.0k
views
News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
7.9 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.9k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
8.3 years ago • updated 8.0 years ago clif.duhn • 0
1
vote
0
replies
1.9k
views
News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
9.8 years ago gagneur ▴ 10
0
votes
0
replies
1.7k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
8.4 years ago Hui Sun Leong ▴ 10
1
vote
0
replies
1.7k
views
Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
7.6 years ago Bernd Fischer ▴ 550
1
vote
1
reply
1.6k
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 15 months ago by ★ 4.2k • written 15 months ago by • 0
0
votes
0
replies
1.6k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.5 years ago • updated 7.3 years ago Luo Weijun ★ 1.6k
0
votes
3
replies
1.6k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.4 years ago by 21k • written 2.5 years ago by ▴ 10
2
votes
3
replies
1.6k
views
RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 8.1 years ago by 51k • written 8.1 years ago by • 0
0
votes
0
replies
1.5k
views
Job: Come apply for our Epidemiologist, AncestryHealth role
genomics genetics design statistics scientist Job
9.1 years ago careers • 0
3
votes
3
replies
1.5k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.2 years ago by 42k • written 5.2 years ago by • 0
0
votes
6
replies
1.5k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.2 years ago Jitendra ▴ 10
3
votes
5
replies
1.4k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 3.5 years ago by • 0
0
votes
0
replies
1.4k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.5 years ago • updated 4.6 years ago Luo Weijun ★ 1.6k
0
votes
2
replies
1.3k
views
Compute test-score statistical significance using control-scores from shuffled population
statistics hypotheses R
8.4 years ago Bade ▴ 310
0
votes
0
replies
1.3k
views
Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
8.0 years ago • updated 7.9 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
1.3k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
7.4 years ago radel • 0
1
vote
4
replies
1.3k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.9 years ago Andrea Carenzo • 0
2
votes
4
replies
1.3k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.8 years ago by ★ 13k • written 6.8 years ago by ▴ 90
0
votes
0
replies
1.3k
views
Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
7.8 years ago mmartin ▴ 20
0
votes
0
replies
1.3k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.8 years ago rbronste ▴ 60
1
vote
0
replies
1.3k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.2 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
1.2k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.3 years ago floriandeckert ▴ 30
0
votes
0
replies
1.2k
views
Two questions about pathifier package
pathways statistics microarray
6.5 years ago arronar • 0
1
vote
2
replies
1.2k
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.8 years ago by 42k • written 3.8 years ago by ▴ 60
0
votes
2
replies
1.2k
views
comparing two GOstats result lists
gostats statistics
updated 6.1 years ago by 66k • written 6.1 years ago by ▴ 20
0
votes
0
replies
1.2k
views
News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.3 years ago kieranrcampbell ▴ 50
0
votes
5
replies
1.2k
views
Comparing sets of differentially expressed genes
deseq2 rnaseq statistics
8.8 years ago sunkid • 0
0
votes
3
replies
1.2k
views
batch effect in EPIC array data
statistics Epigenetics R
updated 17 months ago by ▴ 730 • written 17 months ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
3.6 years ago Laura • 0
2
votes
2
replies
1.1k
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 12 weeks ago by • 0 • written 8.2 years ago by • 0
0
votes
2
replies
1.1k
views
News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.8 years ago • updated 18 months ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.1k
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.9 years ago tatabox • 0
0
votes
1
reply
1.0k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.5 years ago naglemi ▴ 10
50 results • Page 1 of 1
Recent ...
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Comment: 'path' must be string by James W. MacDonald 66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string by cpierce2 • 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest by Robert • 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta by Guido Hooiveld ★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta by Michael Love 42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Popular Question to Lluís Revilla Sancho ▴ 730
Popular Question to maltethodberg ▴ 180
Scholar to Michael Love 42k
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Scholar to Gordon Smyth 51k
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