Showing : Statistics • reset
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limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 8 months ago by • 0 • written 8.7 years ago by • 0
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0
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493
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Job: Statistics Lectureships at St Andrews
JobPosting computational statistics
11 months ago Andy Lynch ▴ 120
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0
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494
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multipollutant models
statistics Regression r limma
14 months ago Jitendra ▴ 10
0
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1
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585
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 14 months ago by 43k • written 14 months ago by • 0
27
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7
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12k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 15 months ago by ▴ 10 • written 7.3 years ago by ▴ 40
1
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568
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Further analysis after limma regression output
statistics Epigenetics limma
updated 16 months ago by 67k • written 16 months ago by ▴ 10
1
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1
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2.5k
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 21 months ago by ★ 4.6k • written 21 months ago by ▴ 10
1
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6
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3.2k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 23 months ago by 43k • written 6.1 years ago by • 0
0
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3
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1.6k
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batch effect in EPIC array data
statistics Epigenetics R
updated 23 months ago by ▴ 760 • written 23 months ago by ▴ 10
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2
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1.3k
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
3.3 years ago • updated 24 months ago Wolfgang Huber ★ 13k
0
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855
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
2.0 years ago alena.vanboemmel • 0
0
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2
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1.0k
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 2.1 years ago by ★ 1.4k • written 2.1 years ago by • 0
1
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0
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897
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
2.5 years ago arisarkar88 ▴ 40
1
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0
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980
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
2.5 years ago Andy Lynch ▴ 120
1
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0
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1.0k
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
2.5 years ago Andy Lynch ▴ 120
0
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6
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1.6k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
2.7 years ago Jitendra ▴ 10
0
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3
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1.8k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 2.9 years ago by 21k • written 3.0 years ago by ▴ 10
3
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5
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1.6k
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P adjusted values in Deseq2
DESeq2 Statistics
written 4.0 years ago by • 0
0
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0
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1.3k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.8 years ago • updated 3.7 years ago Luo Weijun ★ 1.6k
0
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1.1k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
4.2 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
10
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14
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14k
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how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 3.9 years ago by ▴ 20 • written 9.0 years ago by ▴ 30
0
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0
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1.1k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.9 years ago m.jackson • 0
0
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0
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1.1k
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4.0 years ago António Miguel de Jesus Domingues ▴ 510
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1.3k
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.1 years ago Laura • 0
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2.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
6.6 years ago • updated 4.2 years ago Luo Weijun ★ 1.6k
0
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0
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925
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.5 years ago • updated 4.2 years ago whduke • 0
1
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2
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1.4k
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 60
2
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0
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1.1k
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
4.3 years ago Johannes Rainer ★ 2.1k
1
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1.1k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
4.7 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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2.5k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
5.2 years ago • updated 5.1 years ago Gordon Smyth 52k
0
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0
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
6.0 years ago • updated 5.1 years ago Luo Weijun ★ 1.6k
0
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1
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1000
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
5.2 years ago A • 0
0
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1
reply
947
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 5.3 years ago by 43k • written 5.3 years ago by • 0
2
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2
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3.8k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.3 years ago by 52k • written 5.3 years ago by ▴ 10
0
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0
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1.2k
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
5.4 years ago tatabox • 0
3
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3
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1.8k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 5.7 years ago by 43k • written 5.7 years ago by • 0
0
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1
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1.1k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.0 years ago naglemi ▴ 10
0
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0
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947
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package for mismatch distribution?
genetics statistics
6.0 years ago myriam.croze07 • 0
1
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2
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1.1k
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Newbie to all of this
bioconductor statistics
6.3 years ago sportwoo • 0
8
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8
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7.9k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 6.3 years ago by ★ 7.9k • written 6.3 years ago by ▴ 60
1
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2
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1.2k
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 6.4 years ago by 67k • written 6.4 years ago by • 0
1
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4
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1.5k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
6.4 years ago Andrea Carenzo • 0
0
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2
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1.3k
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comparing two GOstats result lists
gostats statistics
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 30
1
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0
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1.4k
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.7 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.4k
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.8 years ago floriandeckert ▴ 30
0
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0
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1.3k
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.8 years ago kieranrcampbell ▴ 50
0
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0
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1.4k
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Two questions about pathifier package
pathways statistics microarray
7.0 years ago arronar • 0
2
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4
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1.4k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 90
0
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0
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1.4k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
7.3 years ago rbronste ▴ 60
0
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0
replies
1.8k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
8.0 years ago • updated 7.8 years ago Luo Weijun ★ 1.6k
50 results • Page 1 of 1
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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k
Thanks @fep29! ^^
Votes
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
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