Showing : Statistics • reset
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61
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multipollutant models
statistics Regression r limma
7 days ago Jitendra ▴ 10
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1
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129
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 8 days ago by 41k • written 12 days ago by • 0
25
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7
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9.5k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 9 weeks ago by ▴ 10 • written 6.2 years ago by ▴ 30
1
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1
reply
197
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Further analysis after limma regression output
statistics Epigenetics limma
updated 10 weeks ago by 64k • written 10 weeks ago by ▴ 10
1
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1
reply
728
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 7 months ago by ★ 3.6k • written 7 months ago by • 0
1
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6
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2.4k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 9 months ago by 41k • written 5.0 years ago by • 0
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3
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674
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batch effect in EPIC array data
statistics Epigenetics R
updated 9 months ago by ▴ 720 • written 9 months ago by ▴ 10
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2
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853
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.1 years ago • updated 10 months ago Wolfgang Huber 13k
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468
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
10 months ago alena.vanboemmel • 0
0
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2
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534
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 11 months ago by ★ 1.3k • written 12 months ago by • 0
1
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474
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
16 months ago arisarkar88 ▴ 40
1
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0
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577
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
16 months ago Andy Lynch ▴ 120
1
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533
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
16 months ago Andy Lynch ▴ 120
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6
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1.1k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
18 months ago Jitendra ▴ 10
0
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3
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1.3k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 21 months ago by 21k • written 22 months ago by ▴ 10
3
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5
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1.2k
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P adjusted values in Deseq2
DESeq2 Statistics
written 2.9 years ago by • 0
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0
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804
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.7 years ago • updated 2.6 years ago Luo Weijun ★ 1.6k
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0
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785
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.0 years ago • updated 2.7 years ago Luo Weijun ★ 1.6k
10
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14
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12k
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how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 2.7 years ago by ▴ 20 • written 7.8 years ago by ▴ 30
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818
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
2.8 years ago m.jackson • 0
0
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0
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751
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
2.9 years ago António Miguel de Jesus Domingues ▴ 490
0
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0
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922
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
3.0 years ago Laura • 0
0
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0
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1.7k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.4 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
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645
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.4 years ago • updated 3.1 years ago whduke • 0
1
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2
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877
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 50
2
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0
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739
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.2 years ago Johannes Rainer ★ 2.0k
1
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0
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714
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.5 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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2.0k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.1 years ago • updated 3.9 years ago Gordon Smyth 49k
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1.2k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.8 years ago • updated 4.0 years ago Luo Weijun ★ 1.6k
0
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1
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639
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.1 years ago A • 0
0
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1
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647
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.1 years ago by 41k • written 4.1 years ago by • 0
2
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2
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2.4k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.2 years ago by 49k • written 4.2 years ago by ▴ 10
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855
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.3 years ago tatabox • 0
3
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3
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1.2k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.5 years ago by 41k • written 4.5 years ago by • 0
0
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1
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839
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.8 years ago naglemi ▴ 10
0
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0
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651
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package for mismatch distribution?
genetics statistics
4.9 years ago myriam.croze07 • 0
1
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2
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831
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Newbie to all of this
bioconductor statistics
5.1 years ago sportwoo • 0
8
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8
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6.0k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.2 years ago by 7.8k • written 5.2 years ago by ▴ 50
1
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2
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829
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.3 years ago by 64k • written 5.3 years ago by • 0
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4
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1.1k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.3 years ago Andrea Carenzo • 0
0
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2
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959
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comparing two GOstats result lists
gostats statistics
updated 5.5 years ago by 64k • written 5.5 years ago by ▴ 20
1
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0
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1.0k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
5.6 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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1.0k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
5.7 years ago floriandeckert ▴ 30
0
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0
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1000
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
5.7 years ago kieranrcampbell ▴ 50
0
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0
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1.0k
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Two questions about pathifier package
pathways statistics microarray
5.9 years ago arronar • 0
2
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4
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1.1k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 70
0
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0
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1.0k
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.2 years ago rbronste ▴ 60
0
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0
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1.4k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
6.8 years ago • updated 6.7 years ago Luo Weijun ★ 1.6k
1
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2
replies
1.9k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.7 years ago by • 0 • written 8.8 years ago by ▴ 80
0
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0
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1.1k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
6.8 years ago radel • 0
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Comment: Java error while running HiCDC overview code by Joy • 0
Thrilling, reminiscent are the emotions when playing the game Headle, a great game that helps you regain energy after a long, tiring, busy …
Comment: DiffBind getting Fold values of near 0 by ATpoint ★ 3.6k
Almost certainly data are noisy and DESeq2 (which is used internally) shrinks the fold changes towards zero, because the naive fold changes…
Comment: metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val? by liqiong464 • 0
Hey, I encountered similiar problems now as handibles metentioned. But it seems a bit different somehow. I have 51 samples divided…
Comment: bam or VCF files from GSE75010 by 3 • 0
Because it is so clever and unique, I believe that many more ideas will be inspired by and borrowed from your original concept. [five night…
Comment: How does Deseq2 deal with the row with zero when calculating size factors by 3 • 0
Thank you for sharing. I've read a great deal on relevant topics! Unlike other articles, yours really made an impression on me. I hope you'…
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Comment: Ensembl down???
Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and
Comment: Ensembl down???
Answer: SingleR annotation of several slots/patients
Answer: List of Deprecated Packages for Bioc3.18
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