2
votes
2
replies
3.6k
views
"full model matrix is less than full rank"
SQuIRE deseq2 DESeq2
4.3 years ago fernandogs97 ▴ 10
0
votes
2
replies
2.2k
views
unable to load shared object Rsamtools.dll':
Devel
updated 4.3 years ago by ★ 6.6k • written 4.3 years ago by • 0
0
votes
2
replies
1.9k
views
Reading vcf file with readVcf
VariantAnnotation
4.3 years ago aurelien.dejode • 0
0
votes
1
reply
1.3k
views
Genic annotations of whole hg38
hg38 genicannotations
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
1
vote
4
replies
2.1k
views
Understanding output of Negative Binomial in DESeq2
DESeq2
4.3 years ago • updated 4.2 years ago synat.keam • 0
1
vote
2
replies
1.6k
views
Swish direction of comparison based on order of factors
fishpond
4.3 years ago Jean • 0
1
vote
5
replies
2.4k
views
Combining two groups in contrast deseq2
DESeq2
updated 4.3 years ago by 43k • written 4.3 years ago by ▴ 50
0
votes
0
replies
656
views
wavclusters function fails to works from highConfSub calculated from the default supplied parameters, instead it only works on highConfSub calculat…
wavClusteR
4.3 years ago xiaoleiusc • 0
0
votes
0
replies
1.1k
views
Remove space on x-axis
ggbio
4.3 years ago sophieagger • 0
0
votes
2
replies
2.0k
views
voom flips the sign relative to log(cpm)
limma limma-voom rnaseq voom
updated 4.3 years ago by 53k • written 4.3 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Postdoctoral Research Scientist position at Columbia University Medical Center
JobPosting
4.3 years ago Hans-Ulrich Klein ▴ 330
0
votes
2
replies
1.9k
views
error: cannot execute 'f951': execvp: No such file or directory when downloading DESeq2 package
DESeq2
updated 4.3 years ago by ★ 5.0k • written 4.4 years ago by • 0
1
vote
4
replies
8.9k
views
At least one covariate is confounded with batch! Please remove confounded covariates and rerun ComBat
ComBat sva
4.4 years ago • updated 4.3 years ago NewBioInfo ▴ 10
2
votes
3
replies
10k
views
ggtree install
ggtree rvcheck
updated 4.3 years ago by • 0 • written 4.3 years ago by ▴ 10
0
votes
2
replies
3.1k
views
Job: Bioinformatics Research Associate, University of Adelaide
job Job australia bioinformatician job bioinformatics
written 10.6 years ago by ▴ 170
1
vote
1
reply
1.3k
views
Effect size using likelihood ratio test in DESeq2
DESeq2
updated 4.4 years ago by ★ 5.0k • written 4.4 years ago by • 0
0
votes
1
reply
1.4k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 4.4 years ago by ★ 1.3k • written 4.7 years ago by • 0
0
votes
1
reply
1.6k
views
Getting a dataset that only contains the flow data within the gated area
flowWorkspace
updated 4.4 years ago by ★ 1.3k • written 4.4 years ago by • 0
4
votes
3
replies
4.9k
views
Warning messages on Apple M1 BigSur
Bioconductor
updated 4.3 years ago by 6.7k • written 4.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Error in `*tmp*`$samples : $ operator is invalid for atomic vectors
Homo.sapiens Homo_sapiens
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
1
reply
1.4k
views
Error in makeTxDbFromGFF(txomeInfo$gtf)
tximeta
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
1
vote
3
replies
2.0k
views
Gradient dotplot
Gviz
4.4 years ago • updated 4.3 years ago sophieagger • 0
0
votes
0
replies
1.1k
views
MEDIPS.meth output
MEDIPS edgeR l
4.4 years ago Aranzazu • 0
0
votes
7
replies
2.7k
views
Returning to edgeR version 3.26.1?
edgeR Bioconductor
updated 4.3 years ago by 53k • written 4.4 years ago by • 0
0
votes
4
replies
1.7k
views
MSstatsPTM - Maxquant - MaxQtoMSstatsPTMFormat - Phosphorylation
MSstatsPTM MaxQtoMSstatsPTMFormat Maxquant
4.4 years ago • updated 4.2 years ago xD1 • 0
0
votes
0
replies
1.3k
views
News: New Package Submission Deadline for Bioc Release 3.14
newpackage Deadline Release Submission
4.4 years ago shepherl 4.3k
2
votes
7
replies
2.3k
views
EdgeR, tumor normal pair, no replicatie but multiple patients, to focus on individual patients not combined
edgeR StatisticalMethod
4.4 years ago • updated 4.3 years ago Field -Ye • 0
2
votes
2
replies
2.9k
views
Correct way to make multiple comparisons on DESeq2?
DESeq DESeq2 R
4.4 years ago jbnrodriguez ▴ 10
0
votes
1
reply
962
views
Information about locateVariants function
genomiclocation canonicaltranscripts locateVariants
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
3
replies
2.0k
views
Issue::DesignPrimers DECIPHER
DECIPHER DesignPrimers
updated 4.4 years ago by • 0 • written 4.4 years ago by • 0
1
vote
0
replies
1.4k
views
News: Bioconductor Release 3.14 Schedule
devel Devel release packages Release
4.4 years ago shepherl 4.3k
0
votes
2
replies
969
views
Adj. P-value identical and high for all the genes
MicroarrayData
4.4 years ago Adriana • 0
0
votes
1
reply
1.0k
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 4.4 years ago by 4.3k • written 4.4 years ago by • 0
3
votes
1
reply
3.4k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
5
votes
2
replies
1.7k
views
How to build a GRangesList where each GRanges element is a CDS coordinate of gene transcripts?
GenomicRanges sesame sesameData GenomicFeatures
4.4 years ago Pratik Mehta ▴ 10
0
votes
1
reply
3.2k
views
Unable to Install packages in R
rstudio
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
1
vote
1
reply
1.9k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 50
1
vote
0
replies
1.4k
views
Job: Revising online course to new versions of R and bioconductor
JobPosting
4.4 years ago Colin • 0
0
votes
1
reply
1.3k
views
Can DiffBind do differential analysis for un-paired peaksets?
DiffBind
updated 4.4 years ago by ★ 5.2k • written 4.4 years ago by • 0
0
votes
2
replies
1.9k
views
Diffbind dba.plotProfile attempt to select less than one element in OneIndex
DiffBind
4.4 years ago bhanratt • 0
0
votes
1
reply
3.3k
views
limma/voom for protein intensity data
limma proteomics voom
updated 4.4 years ago by ★ 5.0k • written 4.4 years ago by ▴ 70
6
votes
5
replies
3.4k
views
How to test full design vs a reduced design in limma?
limma
updated 2.9 years ago by 53k • written 4.4 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Outliers on DESEq2 Results
RNASeqR DifferentialExpression DESeq2
updated 4.4 years ago by 43k • written 4.4 years ago by • 0
2
votes
2
replies
3.2k
views
Volcano plots of DEGs from Swish are weird
DESeq2 fishpond salmon swish
4.4 years ago • updated 4.3 years ago Qin ▴ 10
0
votes
0
replies
1.5k
views
Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
4.4 years ago Daniel • 0
2
votes
2
replies
1.9k
views
How to subset GRangesList by seqnames
GenomicRanges
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 10
0
votes
1
reply
2.5k
views
Gene expression analysis between three different tissues
DESeq2 RNAseq
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
5
replies
3.1k
views
EnhancedVolcano plot - labels
EnhancedVolcano
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by • 0
0
votes
1
reply
1.1k
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 4.4 years ago by ★ 6.6k • written 4.4 years ago by • 0
1
vote
1
reply
1.5k
views
Degust: what normalization method does it use
DEGUST Normalization CPM
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
46,730 results • Page 113 of 935
Recent ...
Replies
Comment: Open Positions for Doctoral Researchers in Molecular Medicine by TikTs33ssalpc • 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application by TikTs33ssalpc • 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k
The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards • All
Popular Question to ATpoint ★ 5.0k
Popular Question to Martin Morgan 25k
Teacher to Michael Love 43k
Popular Question to A • 0
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, 20 minutes ago
Pakistan, 50 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Seattle, WA, United States, 1 hour ago
Poland, 5 hours ago
Traffic: 895 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6