3
votes
2
replies
666
views
How to specify a version of the wanted package ?
"genomicranges" "R"
5.9 years ago celine.labbe ▴ 20
0
votes
0
replies
1.8k
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
5.9 years ago Patrick Kimes ▴ 10
1
vote
6
replies
1.4k
views
topTable no t-test results
limma
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
2
votes
6
replies
1.7k
views
Multiple problems with BiocWorkflowTools
BiocWorkflowTools
updated 5.9 years ago by ★ 6.6k • written 5.9 years ago by ▴ 160
0
votes
4
replies
3.6k
views
How to list all "..." parameters inside R function
ReactomePA clusterProfiler
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
2
votes
3
replies
758
views
Order of levels within factors affects DESeq2 results when interaction is included
deseq2
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
2
votes
4
replies
1.8k
views
Weird error in Rstudio trying to retreive and load genomic data from external databases
R software error Bioconductor
5.9 years ago svlachavas ▴ 840
0
votes
0
replies
995
views
News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
5.9 years ago Astrid_Ensembl • 0
0
votes
6
replies
3.1k
views
GenomicRanges: Find first, second and third nearest genes
R GenomicRanges Granges
updated 5.9 years ago by 53k • written 5.9 years ago by ▴ 20
1
vote
2
replies
899
views
EdgeR function nearestTSS() fails saying NAs are not allowed in subscripted assignments
edgeR nearestTSS
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
2
votes
2
replies
1.1k
views
Test wether bioconductor class is linear or rectangular in base R
class S4
updated 5.9 years ago by 16k • written 5.9 years ago by • 0
0
votes
2
replies
1.7k
views
Problems while installing HTSeqGenie and gmapR
software error HTSeq installation
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
0
votes
0
replies
447
views
PureCN Raw Coverage Available?
PureCN coverage raw_coverage
5.9 years ago twtoal ▴ 10
0
votes
0
replies
1.0k
views
News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor conference event bioc2020 News
5.9 years ago shepherl 4.3k
4
votes
6
replies
21k
views
R studio input style for generating heatmap (RNAseq)
heatmap r studio log2foldchange
updated 5.9 years ago by ★ 13k • written 5.9 years ago by • 0
1
vote
2
replies
1.6k
views
Read counts between QSEA and MEDIPs
qsea medips
updated 5.9 years ago by ▴ 280 • written 5.9 years ago by • 0
0
votes
6
replies
1.8k
views
BiocParallel with drake hangs
BiocParallel
5.9 years ago biomiha ▴ 20
0
votes
0
replies
893
views
Plot seperate Schoenfeld plots for different clusters/subtypes
R survival analysis
5.9 years ago omarrafiqued ▴ 50
0
votes
0
replies
1.2k
views
Job: Postdoctoral Associate in Translational Bioinformatics and Cancer Immunotherapy at UPMC
cancer immunotherapy translational bioinformatics Data mining Statistical modeling Job
5.9 years ago lhuang7 ▴ 50
0
votes
0
replies
965
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
5.9 years ago mudithekanayake • 0
1
vote
5
replies
747
views
subtle differences in results based on how Design Table is coded
deseq2
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
0
votes
0
replies
947
views
News: RNAseq data analysis with R and Bioconductor
limma deseq2 go edger News
5.9 years ago info ▴ 10
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 5.9 years ago by ▴ 280 • written 5.9 years ago by ▴ 20
7
votes
4
replies
7.3k
views
Limma when to use zero intercept
limma regression differential expression linear model
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
0
replies
849
views
Z' factor in high throughput screening assays
HTS QC
updated 5.9 years ago by 4.3k • written 5.9 years ago by • 0
0
votes
2
replies
1.3k
views
Normalization and dispersion estimates in timeseries data with highly variable read numbers
EdgeR dispersion normalization
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
5
replies
2.1k
views
eBayes options and decideTests method
limma eBayes decideTests topTable
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
2
replies
1.2k
views
csSAMfit with covariates
limma microarray deconvolution cell type
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
0
replies
830
views
permutation and randomization tests
permutation randomization
5.9 years ago Bogdan ▴ 670
0
votes
0
replies
1.3k
views
ArrayExpress error when creating rawset
ArrayExpress arrayexpress
5.9 years ago Majeed MJ • 0
0
votes
3
replies
1.2k
views
how to interpret results from 3way design in DESeq2
deseq2
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
0
votes
6
replies
1.6k
views
HiTC problem exporting to my5C
HiTC HiC-Pro
5.9 years ago sergio.espeso-gil • 0
3
votes
6
replies
4.7k
views
Including multiple covariates in edgeR
edger R limma
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
2
replies
2.2k
views
error with downloading NCBI data for makeorgpackagefromNCBI?
annotationforge makeOrgPackageFromNCBI
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
0
votes
3
replies
1.7k
views
Highly variable gene analysis including RUVs batch correction
deseq2 RUV batch highly variable genes
updated 5.9 years ago by • 0 • written 5.9 years ago by • 0
2
votes
12
replies
2.5k
views
BioFileCache Problem and not linking to ensembldb problem in TxiMeta
Tximeta BioFileCache Ensembldb
updated 5.9 years ago by 25k • written 5.9 years ago by ▴ 30
1
vote
2
replies
1.5k
views
Microarray expression analysis
annotation
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
1
reply
1.4k
views
Should the design matrix for removeBatchEffect include an intercept?
removeBatchEffect limma
updated 5.9 years ago by 53k • written 5.9 years ago by ▴ 10
1
vote
1
reply
1.1k
views
Adjust standard error and volcano plot for non gene data using eBayes()?
limma lipidomic
updated 5.9 years ago by 53k • written 5.9 years ago by • 0
0
votes
1
reply
1.5k
views
Retrieving ChIP-seq data from Geo database
ChIPseq GEO data base
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
3
votes
4
replies
3.1k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
5.9 years ago • updated 2.9 years ago samwhite ▴ 20
4
votes
5
replies
1.8k
views
Difference in dimensionality reduction plots based on DESeq2 R package and core functions for RNA-Seq data
deseq2 vst pca cpm
5.9 years ago svlachavas ▴ 840
2
votes
8
replies
3.5k
views
DESeq2 : log2FC discrepencies between results and lfcShrink
deseq2 shrinkage
updated 3.2 years ago by 43k • written 5.9 years ago by ▴ 20
0
votes
1
reply
474
views
Heatmap (20 most expressed miRNAs) for min. expression threshold 1 and normalization method RCadj
rcadj
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
2
votes
4
replies
1.7k
views
DESeq2 - problem with inferring correct results.
deseq2 rnaseq sva fdrtool ihw
updated 5.9 years ago by 43k • written 5.9 years ago by • 0
0
votes
1
reply
895
views
Problem starting msmsworkflow (RMassBank)
software error RMassBank
updated 5.9 years ago by 4.3k • written 5.9 years ago by • 0
0
votes
4
replies
1.8k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 5.9 years ago by ▴ 140 • written 5.9 years ago by ▴ 30
0
votes
1
reply
940
views
Unable to install groupGO in RStudio
software error
5.9 years ago mzwanelen ▴ 10
0
votes
0
replies
1.4k
views
Error in trying to convert a gff file -> txdb object using GenomicFeatures::makeTxDbFromGFF()
GenomicFeatures annotation gff GenomicRanges
updated 5.9 years ago by 4.3k • written 5.9 years ago by • 0
7
votes
9
replies
5.6k
views
GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
5.9 years ago • updated 2.8 years ago samwhite ▴ 20
46,730 results • Page 178 of 935
Recent ...
Replies
Comment: Justify title track when rotation = 0 by TikTs33ssalpc • 0
It sounds like your track title alignment issue comes from how the title panel anchors and rotates text. When you set rotation , the title …
Comment: Open Positions for Doctoral Researchers in Molecular Medicine by TikTs33ssalpc • 0
This rotation style program sounds like a great way to explore different fields before committing to one. Similarly, apkgamex lets users ex…
Comment: Bioconductor Maintainer Application by TikTs33ssalpc • 0
This compliance focused approach makes a lot of sense. Clear reminders and opt in policies help maintain trust, similar to how users look f…
Comment: Bile acid analysis with limpa by ATpoint ★ 5.0k
Wilcox/Mann-Whitney-U cannot work because it is bound to sample size even when all of group X are lower than all of group Y. At 4 vs 3 the …
Comment: chemmineOB install help by Jeremy • 0
I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…
Votes
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards • All
Popular Question to das.traveller • 0
Popular Question to ATpoint ★ 5.0k
Popular Question to Martin Morgan 25k
Teacher to Michael Love 43k
Popular Question to A • 0
Locations • All
United States, 46 minutes ago
WEHI, Melbourne, Australia, 1 hour ago
Australia, 2 hours ago
United States, 4 hours ago
United States, 5 hours ago
Traffic: 820 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6