User does not exist
2
votes
3
replies
1.7k
views
voom command broken in limma_3.34.5?
limma voom
updated 8.0 years ago by 53k • written 8.0 years ago by • 0
9
votes
8
replies
7.3k
views
Limma Voom produces many identical adjusted p-values
limma voom adjusted pvalue
updated 8.0 years ago by 53k • written 8.0 years ago by ▴ 370
3
votes
2
replies
1.5k
views
DESeq2 1.16.1 : Zero count values re-occurrence of issue 56191?
deseq2
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
1
vote
12
replies
5.0k
views
DESeq2 LFC shrinkage is for designs with interactions
deseq2 lfcshrink
8.0 years ago yk.gatc • 0
2
votes
7
replies
2.0k
views
modifying compound datasets
R
8.1 years ago • updated 8.0 years ago harbydonald • 0
2
votes
4
replies
2.1k
views
Make window around TSS and get values from another data.frame for bins of the specified window
R granges genomicranges chipseq
updated 8.0 years ago by ★ 11k • written 8.0 years ago by ▴ 20
1
vote
1
reply
1.5k
views
seqnames versus chrom
BiocGen rtracklayer genomeinfodb
updated 8.0 years ago by ★ 11k • written 8.0 years ago by • 0
0
votes
0
replies
1.6k
views
Two questions about pathifier package
pathways statistics microarray
8.0 years ago arronar • 0
1
vote
0
replies
2.1k
views
Job: Bioinformatician/Biostatistician - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
rnaseq biostatistics bioinformatician next-generation sequencing Job
8.0 years ago Federico Marini ▴ 180
0
votes
2
replies
1.7k
views
error message from oligo package
oligo
updated 4.5 years ago by • 0 • written 8.0 years ago by • 0
0
votes
1
reply
1.5k
views
ChIPQC Error: subscript contains out-of-bounds ranges
R
updated 3.8 years ago by • 0 • written 8.0 years ago by • 0
1
vote
1
reply
2.7k
views
Inconsistency of results GSEA clusterprofiler
gsea clusterprofiler
8.0 years ago Stane ▴ 40
2
votes
2
replies
1.3k
views
motifStack: how to make the start of motif logos have the same distance to the center
motifStack
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
2
votes
2
replies
2.6k
views
RUVg with differential transcript expression?
ruvseq sleuth
updated 8.0 years ago by ▴ 980 • written 8.1 years ago by • 0
0
votes
2
replies
3.3k
views
Processing array with R
cdf software error affy R
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
0
votes
5
replies
1.2k
views
results function of DESeq2 devel fails
deseq2
8.0 years ago unamourdeswann ▴ 10
0
votes
4
replies
2.2k
views
how to reformat complex list object (derived with TCGAbiolinks)?
TCGA tcgabiolinks list reformat
8.0 years ago Guido Hooiveld ★ 4.1k
2
votes
1
reply
1.8k
views
Build error: could not find function "bplapply"
biocparallel build report
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 180
0
votes
1
reply
1.7k
views
SC3 Package: marker genes and normal genes obtained from featureData
SC3
updated 8.0 years ago by ▴ 150 • written 8.1 years ago by • 0
1
vote
1
reply
1.5k
views
soggi average plot
soggi multiple bam cancer
updated 8.0 years ago by ▴ 10 • written 8.0 years ago by • 0
0
votes
1
reply
1.0k
views
result from DESeq2 is hard to explain
deseq2
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
0
votes
2
replies
1.8k
views
IlluminaHumanMethylationEPIC array nSNPsRead and MethylSet probes
illuminaio illuminahumanmethylationepicmanifest minfi
updated 8.0 years ago by ★ 6.5k • written 8.0 years ago by ▴ 160
1
vote
4
replies
3.3k
views
Contrasts & coefficients in limma
design and contrast matrix
updated 8.0 years ago by 53k • written 8.0 years ago by • 0
1
vote
3
replies
1.8k
views
Transform index to chromosome in DECIPHER package
decipher
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 40
0
votes
1
reply
1.7k
views
flowCL - svn conversion to Github
flowCL git-svn bridge github
updated 8.0 years ago by ▴ 140 • written 8.0 years ago by ▴ 60
1
vote
1
reply
4.6k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
0
votes
2
replies
3.6k
views
custom annotation in annotatePeak
chipseeker Guangchuang Yu
8.1 years ago • updated 8.0 years ago andrew.gehrke • 0
0
votes
3
replies
1.5k
views
DESeq2: would 'contrast' work for serial experiments?
DESeq2 mirna-seq small RNA-seq
updated 8.0 years ago by 43k • written 8.0 years ago by ▴ 40
1
vote
3
replies
5.4k
views
How to select top 10% highly variable genes in microarray data?
r microarray snp6.0 oligo
updated 8.0 years ago by ▴ 360 • written 8.0 years ago by ▴ 120
0
votes
0
replies
781
views
Why the threshold rank invariant normalization(Invariant set normalization) needs to be *10?
microarray normalization
8.0 years ago dasiav7 • 0
0
votes
0
replies
1.2k
views
How to modify eSet classes (specifically for Minfi)
Minfi eset
8.0 years ago SplittingInfinity ▴ 60
1
vote
0
replies
2.5k
views
News: May Institute 2018 - Computation and statistics for mass spectrometry and proteomics at Northeastern University in Boston
bioconductor training course msstats proteomics News
8.0 years ago mnchoi67 ▴ 40
1
vote
1
reply
1.6k
views
MSstats changes to dataprocess
MSstats
updated 8.0 years ago by ▴ 40 • written 8.1 years ago by • 0
0
votes
0
replies
1.1k
views
Rippseeker problem with allocate space
RIP ripseek ripseeker
8.0 years ago jarod_v6@libero.it ▴ 40
2
votes
2
replies
2.0k
views
ensembldb and pseudogenes mapping to the same Ensembl ID
ensembldb
8.1 years ago • updated 8.0 years ago meeta.mistry ▴ 30
1
vote
0
replies
1.7k
views
Job: Applications are now invited for the FIMM-EMBL International PhD program
bioinformatics data science PhD Job
8.0 years ago gretchen.repasky ▴ 20
3
votes
3
replies
2.1k
views
BiocParallel: zombie processes on FORK cluster
biocparallel parallel
updated 8.0 years ago by 25k • written 8.0 years ago by ▴ 280
0
votes
0
replies
859
views
TCGAvisualize_EAbarplot error in TCGAbiolinks
tcgabiolinks tcgavisualize_EAbarplot differential expression
8.0 years ago fawazfebin ▴ 60
2
votes
2
replies
6.3k
views
How to select mergeCutHeight in WGCNA?
WGCNA mergeCutHeight
updated 8.0 years ago by ★ 3.0k • written 8.1 years ago by ▴ 60
6
votes
8
replies
11k
views
WGCNA export to cytoscape
wgcna cytoscape
updated 8.0 years ago by ▴ 60 • written 8.7 years ago by ▴ 60
0
votes
1
reply
851
views
Difference between unifactorial and two-factorial analysis
deseq2
updated 8.0 years ago by 43k • written 8.0 years ago by • 0
3
votes
10
replies
3.7k
views
Limma voom RNA-seq analysis with both categorical and continuous confounders
limma voom
updated 8.0 years ago by 53k • written 8.1 years ago by • 0
1
vote
1
reply
2.5k
views
Filtering a BED file according to genomic annotation
bed files bedtools filtering chipseq
updated 8.1 years ago by ★ 29k • written 8.1 years ago by ▴ 60
0
votes
1
reply
2.1k
views
GIT: Fetch package source from remote upstream
git github developers
updated 8.1 years ago by ▴ 140 • written 8.1 years ago by • 0
2
votes
2
replies
1.5k
views
scran: trendVar() / lm.fit() fails in single-cell RNAseq experiment
scran
updated 8.1 years ago by ★ 29k • written 8.1 years ago by • 0
0
votes
4
replies
1.9k
views
problem with get_link function
STRINGdb get_link bug
8.1 years ago cristinapasi • 0
0
votes
6
replies
2.0k
views
Unexpected results in the dba.report output files
diffbind
updated 8.1 years ago by • 0 • written 8.3 years ago by • 0
4
votes
2
replies
2.0k
views
How to check if the microarray data is from codelink
codelink microarray
updated 8.1 years ago by 21k • written 8.1 years ago by ▴ 260
1
vote
1
reply
2.5k
views
Job: junior level position in proteomics/data science
proteomics machine learning git docker Job
updated 8.1 years ago by • 0 • written 8.3 years ago by ▴ 70
0
votes
0
replies
1.9k
views
GSEA-class file (.cls) parsing error message
gsea
8.1 years ago snguyen268 • 0
46,730 results • Page 289 of 935
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It sounds like your track title alignment issue comes from how the title panel anchors and rotates text. When you set rotation , the title …
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