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3
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How to compute Gene Regulatory Network on microarraay data
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How to compute Microarray gene interaction
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Our mart (on https) is not compatible with biomaRt access. What's wrong?
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Error in Matrix
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updated 9.7 years ago by ★ 6.5k • written 9.7 years ago by • 0
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1
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extract chromosomes and read-starts from a BAM file to a data.frame?
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 80
0
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1.4k
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error with ELMER package
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updated 9.7 years ago by • 0 • written 9.7 years ago by • 0
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Strategy for choosing window size and read extension length for csaw?
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updated 9.7 years ago by ★ 29k • written 9.7 years ago by ★ 7.9k
1
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OpenCyto - getting the gates correct
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9.7 years ago Ulrik Stervbo ▴ 30
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1.1k
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rtracklayer's browserSession hangs indefinitely
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9.7 years ago matt.chambers42 ▴ 10
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1.6k
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convert XStringViews into GRanges
GRanges XStringViews
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 40
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Is there any way to set bsseq object as 'smoothed'?
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9.7 years ago biohack92 • 0
0
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0
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1.5k
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argument "intgroup" is missing in arrayQualityMetrics
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9.7 years ago 13117882295 • 0
1
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1
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1.4k
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Combining more than 2 ExpressionSets at the same time,
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9.7 years ago g_draculla ▴ 10
1
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7
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[DESeq2] Multi-factor designs
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9.7 years ago ofonov ▴ 10
1
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1
reply
2.1k
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How to inteprate distances calculated by cmdscale?
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9.7 years ago Adam • 0
1
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2
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package ‘org.At.tair.db’ could not be loaded
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updated 9.7 years ago by 25k • written 9.7 years ago by • 0
1
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1
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reactive CellCODE heatmap
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updated 9.7 years ago by ▴ 750 • written 9.7 years ago by ▴ 20
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TRONCO: PDF reference manual disagrees with help in development version
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 70
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SVA: Including variable of interest in ComBat model matrix
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1
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ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 9.7 years ago by ★ 1.7k • written 9.7 years ago by • 0
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14
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3.9k
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Errors using wavClusteR package - "range cannot be determined from the supplied arguments (too many NAs)"
wavClusteR
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1.4k
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Building VariantAnnotation on Windows - Makevars.win error
windows variantannotation makevars.win
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
2
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2
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FourCSeq- paired-end library ?
fourcseq
updated 9.7 years ago by ▴ 150 • written 9.7 years ago by • 0
2
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4
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3.0k
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FourCSeq - how many bases to trim with countFragmentOverlaps
fourcseq
updated 9.7 years ago by ▴ 150 • written 10.3 years ago by • 0
2
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2
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1.5k
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geom problem with SomaticSignatures plotRainfall
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2
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3
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Unexpected reversal in normalization factors from csaw
csaw normalization
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ★ 7.9k
1
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5
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Confused by results from CAMERA gene set testing
limma camera gene set testing
9.7 years ago claire.n.levy ▴ 10
1
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3
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beadchip annotation data missing gene "names"
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updated 9.7 years ago by 68k • written 9.7 years ago by • 0
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2
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940
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Deseq2 nested interaction
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updated 9.7 years ago by 43k • written 9.7 years ago by • 0
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6
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Using edgeR with "traditional" coverage data?
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7
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ballgown custom models
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9.8 years ago • updated 9.7 years ago sbcn ▴ 80
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Genome versions of the VcfFiles from AnnotationHub
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updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 10
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Seeking confirmation on manually setting contrasts for a 3-factor design in DESeq2 with multiple interaction terms
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Error: could not find function "HTSeqCounts"
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
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3
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Differing topTable() results with Limma with and without specifying coefficient
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Premature EOF within Description Field - Bos Taurus
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 370
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High number of significant DE genes with low baseMean, is this abnormal?
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Interpreting contrasts in edgeR
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Updated DESeq2 performance on highly replicated yeast RNA-seq data
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updated 9.7 years ago by 68k • written 9.7 years ago by 43k
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2
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queryLoc2refLoc not implemented?
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Allele Specific Expression Using edgeR
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9.7 years ago ugwu.nelson ▴ 10
0
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6
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MEDIPS: Number of windows tested in Paired-end data set
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9.7 years ago peter.mcerlean • 0
3
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1
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3.1k
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Clustering with differentially expressed genes in RNAseq
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updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
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5
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ggsave option for ggbio Tracks function
updated 9.7 years ago by ▴ 350 • written 13.0 years ago by ★ 1.1k
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plotBed R data frame - last line plotted with line 1
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9.7 years ago waqasnayab • 0
1
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1
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GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
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News: Ensembl release 84 is out!
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updated 9.7 years ago by ▴ 20 • written 9.8 years ago by ▴ 800
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PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
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9.7 years ago enricoferrero ▴ 680
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4
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Gviz: Set height to avoid empty whitespace below reads in an AlignmentsTrack?
gviz
9.7 years ago stianlagstad ▴ 90
0
votes
0
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1.5k
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Is it possible to make some spheres around groups of points (plot3d) and measure distances between them?
rgl plot3d plotmds
9.7 years ago Adam • 0
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