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1.2k
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plotDEXSeq error?
DEXSeq
dex
3.1 years ago
barrypraveen
• 0
0
votes
0
replies
1.2k
views
Job:
Faculty position: Lecturer/Senior Lecturer (Bioinformatics/Computational Biology) at University of Wollongong Australia
permanent
faculty
australia
academic
3.1 years ago
hyu
• 0
0
votes
0
replies
1.0k
views
Option request for featureCounts: Add an order of read manipulation to 'shift > reduction > extension'
SubRead
featureCounts
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
Leon
• 0
0
votes
1
reply
1.6k
views
Trouble with importing transcript counts with Salmon
Salmon
tximport
RNAseq
EdgeR
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.1 years ago by
Jenni
• 0
0
votes
1
reply
1.0k
views
KEGGgraph parseKGML2Graph function
KEGGgraph
updated 3.1 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Cathy
• 0
0
votes
1
reply
1.3k
views
Error in DESeqDataSetFromHTSeqCount
DESeq2
RNA-seq
HTseq
DESeqDataSetFromHTSeqCount
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
abhay.kanodia
• 0
0
votes
1
reply
942
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Marianna
▴ 20
0
votes
2
replies
1.6k
views
ChIP-Seq Analysis: Comparing Unannotated Peaks with DESeq2
DESeq2
MACS2
3.2 years ago • updated 3.1 years ago
vanbelj
▴ 30
2
votes
4
replies
4.2k
views
EnhancedVolcano legendPosition error
EnhancedVolcano
updated 3.2 years ago by
elefth.pavlos
▴ 40 • written 3.2 years ago by
Allison
• 0
0
votes
1
reply
1.4k
views
SingleR error with multiple references
SingleR
updated 2.6 years ago by
Irish
• 0 • written 3.2 years ago by
carlo
• 0
0
votes
0
replies
756
views
is it possible to limit fgsea to particular tissue type?
fgsea
3.2 years ago
kavator
▴ 30
0
votes
0
replies
1.1k
views
Job:
EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq
Transcriptomics
Pathways
Epigenetics
RNASeq
3.2 years ago
whduke
• 0
0
votes
3
replies
2.4k
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 18 months ago by
Arun
• 0 • written 3.2 years ago by
irvin.ng
• 0
0
votes
0
replies
999
views
Job:
Bioinformatician
JobPosting
3.2 years ago
hdawson
• 0
1
vote
2
replies
1.7k
views
how to plot iranges in r version 4.0.0?
IRanges
updated 3.2 years ago by
alekeuro
▴ 10 • written 5.5 years ago by
aissabenyoucef
• 0
0
votes
2
replies
3.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
3.2 years ago
Chruut
• 0
0
votes
5
replies
1.8k
views
Limma: posterior distribution of error variance
limma
3.2 years ago • updated 3.1 years ago
gabriel.hoffman
▴ 170
0
votes
5
replies
4.9k
views
Error with DESeq2: DESeqDataSet(se, design = design, ignoreRank) : counts matrix should be numeric, currently it has mode: character
DESeq2
updated 3.1 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
molly.fraser
• 0
0
votes
2
replies
1.1k
views
Definition of western and non-western samples in CuratedMetagenomicData
curatedMetagenomicData
updated 3.2 years ago by
Lucas Schiffer
▴ 240 • written 3.2 years ago by
pd378
• 0
2
votes
2
replies
1.4k
views
Simple queryAE command returning "Error: 1: Document is empty"
queryAE
ArrayExpress
3.2 years ago
alekeuro
▴ 10
1
vote
1
reply
2.0k
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
ilaria.debenedictis
• 0
0
votes
3
replies
3.4k
views
Gene ontology enrichment analysis
rnaseq
rnaseqGene
geneontology
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
acram
• 0
2
votes
1
reply
1.8k
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
3.2 years ago
aguirre
▴ 20
1
vote
3
replies
2.1k
views
Error: unexpected input in "mod <- model.matrix( ̃~"
model.matrix
3.2 years ago
p.m.craven
• 0
3
votes
6
replies
3.5k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
3.2 years ago • updated 3.1 years ago
Sara
• 0
0
votes
1
reply
1.4k
views
OligoArrayAux fails to compile
DECIPHER
3.2 years ago • updated 3.1 years ago
fabian.roger08
▴ 10
0
votes
1
reply
967
views
Bambu input file format issue
bambu
updated 3.2 years ago by
Jonathan Göke
▴ 60 • written 3.2 years ago by
Sheetal
• 0
3
votes
4
replies
2.2k
views
Convert a bed file to bigBed with rtracklayer
bed
bigBed
rtracklayer
ucsc
3.2 years ago
L
▴ 50
0
votes
1
reply
859
views
Failed Construction of DESEQDataSet Object: C.Elegans
Celegans
DESeq2
dds
Errorinseq_len(length(idx)-1)
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Enzo.Scifo
• 0
1
vote
1
reply
1.4k
views
Strange error with RMA during Affymetrix data analysis
AffymetrixChip
RMA
updated 3.2 years ago by
Mike Smith
★ 6.6k • written 3.2 years ago by
Sara
▴ 20
3
votes
0
replies
1.6k
views
News:
Save the Date Bioc2023!
Bioc2023
Conference
Bioconductor
3.2 years ago
shepherl
4.3k
1
vote
3
replies
2.1k
views
Error using biomaRt
biomaRt
updated 3.2 years ago by
Mike Smith
★ 6.6k • written 3.2 years ago by
arantes_gabriel
▴ 10
0
votes
1
reply
1.1k
views
News:
Bioconductor Scientific or Informatic Technology Advancement Award!
Recognition
Awards
Bioc2022
Bioconductor
written 3.7 years ago by
shepherl
4.3k
1
vote
2
replies
1.4k
views
News:
Ensembl 108 has been released!
biomaRt
ensembldb
ensembl
written 3.2 years ago by
Louisse
▴ 10
0
votes
4
replies
1.7k
views
paired tests with tidybulk and edgeR
edgeR
R
tidyverse
tidybulk
3.2 years ago
Amit Indap
▴ 10
3
votes
5
replies
2.4k
views
limma-trend vs. limma-voom theoretical difference
limma
limma-trend
limma-voom
updated 24 months ago by
floriandeckert
▴ 30 • written 3.2 years ago by
hainct
• 0
0
votes
0
replies
682
views
Conversion of multiple protein fasta sequences into their gene name
GenePrediction
3.2 years ago
AROCKIYA
• 0
0
votes
3
replies
2.0k
views
Blacklist error in DiffBind
DiffBind
Blacklist
updated 22 months ago by
marram_wang
• 0 • written 3.2 years ago by
Romain
• 0
2
votes
1
reply
1.1k
views
Error in DiffBind dba.blacklist & dba.count
DiffBind
updated 3.2 years ago by
Rory Stark
★ 5.2k • written 3.2 years ago by
Stevie Pederson
• 0
0
votes
1
reply
825
views
Analysing only significant genes from differential expression analysis in a replication cohort
RNASeq
updated 3.2 years ago by
swbarnes2
★ 1.4k • written 3.2 years ago by
S
• 0
0
votes
2
replies
1.9k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 3.0 years ago by
Christian Mertes
• 0 • written 3.2 years ago by
me.achleitner
• 0
2
votes
3
replies
2.5k
views
Rsubread featureCounts outputs dozens of temp files, no counts
RNAseq
R
Rsubread
featurecounts
RNASeq
updated 3.2 years ago by
Gordon Smyth
53k • written 3.2 years ago by
Jon
• 0
0
votes
2
replies
1.4k
views
DESeq2 correction for biological replicate variance using design
DESeq2
3.2 years ago
lukas.krauss
• 0
1
vote
1
reply
1.3k
views
SingleR using TPM in a bulk RNA seq dataset
SingleR
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
mea2712
• 0
0
votes
3
replies
1.8k
views
Problem installing biomaRt on mac
biomaRt
mac
updated 2.4 years ago by
15753563659
▴ 80 • written 3.2 years ago by
alfonsosaera
• 0
1
vote
2
replies
1.5k
views
ERROR IN INSTALLATION PACKAGE IN R
derfinderData
SpikeInSubset
musicatk
Guitar
offtopic
updated 3.2 years ago by
Marcel Ramos
700 • written 3.2 years ago by
Chanchal
• 0
0
votes
0
replies
637
views
GRaNIE visualizeGRN function bug
GRaNIE
3.2 years ago
Лиза
• 0
0
votes
3
replies
2.0k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 3.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.2 years ago by
i.am.filippov
• 0
0
votes
1
reply
870
views
PCA plot, plus sign?
pathwayPCA
updated 3.2 years ago by
Kevin Blighe
★ 4.0k • written 3.2 years ago by
Alena
• 0
0
votes
2
replies
2.1k
views
GenomicRanges method to make the total width of ranges a certain value?
GenomicRanges
updated 3.2 years ago by
Malcolm Cook
★ 1.6k • written 3.2 years ago by
mike-zx
• 0
46,712 results • Page
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Comment: Incosistencies in buildSNNGraph() function
by
ATpoint
★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
by
Aaron Lun
★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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