Showing : Error • reset
0
votes
7
replies
1.5k
views
Graphics API Version Mismatch Error with DESeq2 and ggplot2 in RStudio on Ubuntu 22.04
error RStudio ggplot2 DESeq2
updated 5 months ago by 65k • written 5 months ago by • 0
10
votes
10
replies
6.7k
views
biomaRt not working - lazy table error
error lazy R biomaRt table
updated 5 weeks ago by • 0 • written 6 months ago by ▴ 10
0
votes
0
replies
276
views
proActiv - Error in estimateSizeFactorsForMatrix when using the proActiv function
proActiv error estimateSizeFactorsForMatrix
6 months ago Chris • 0
0
votes
1
reply
385
views
Problems when running GDC_prepare in R
TCGAbiolinks error GDC_prepare
6 months ago leon • 0
0
votes
3
replies
612
views
DiffBind issue with edgeR$bTagwise and DESeq2$fitType
Config DiffBind Error
updated 9 months ago by ★ 5.2k • written 9 months ago by • 0
0
votes
17
replies
3.4k
views
What causes this DESeq2 error at "fitting model and testing"?
deseq2 differential expression error
updated 10 months ago by • 0 • written 6.6 years ago by • 0
0
votes
1
reply
464
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB easyrun error mm10 Mus_musculus_Data
updated 11 months ago by 65k • written 11 months ago by • 0
0
votes
0
replies
478
views
Are LFQ workflow arguments from DEP package all required or optional?
LFQ R DEP error
12 months ago aymanreffai • 0
0
votes
8
replies
1.1k
views
fail to annotate chromosome data to single cell object
error SingleCell annotate
updated 5 months ago by • 0 • written 13 months ago by • 0
0
votes
2
replies
541
views
Error message trying to open downloaded package
error DEP
14 months ago kcpaul168 • 0
0
votes
0
replies
541
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult DEqMS sca.adj.pval error p-value
18 months ago Bastian • 0
0
votes
3
replies
962
views
tximport error
error tximport
updated 19 months ago by 41k • written 19 months ago by • 0
0
votes
3
replies
2.1k
views
[ExpressionSet] Question: Error in validObject(.Object)
ExpressionSet Assay NanoString Error Data
updated 21 months ago by 65k • written 21 months ago by • 0
0
votes
7
replies
1.4k
views
Centos 7.8, custom-compiled R-4.1: iPath_1.0.0 won't install
error iPath R compilation
2.3 years ago wjb2130 • 0
0
votes
2
replies
819
views
Error in TFBSTools at SitesetList
error TFBSTools R
2.5 years ago HELEN • 0
4
votes
9
replies
3.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt error getBM
updated 2.9 years ago by ★ 6.5k • written 3.2 years ago by ▴ 20
0
votes
3
replies
878
views
bioconductor.org not reachable from EU region
error http429 server
3.0 years ago ashu.upadhyay2206 • 0
0
votes
2
replies
1.3k
views
Finding the correct version of DESeq2 for my version of R (3.6.1)
error DESeq2 Install
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
1
vote
2
replies
2.9k
views
error in DESeq2 results(dds)
DESeq2 datasetfrommatrix results error
3.2 years ago james • 0
3
votes
4
replies
2.9k
views
R Error: package ‘GenomeInfoDb’ could not be loaded on MacBook
error mac DESeq2 GenomeInfoDb R
3.3 years ago • updated 3.2 years ago Dan ▴ 20
1
vote
1
reply
963
views
Errors in installing RforProteomics package
error RforProteomics Install
updated 3.4 years ago by ★ 6.5k • written 3.4 years ago by • 0
0
votes
1
reply
724
views
testClusters and trimClusters error in BiSeq
BiSeq testClusters error dmr
3.8 years ago akhaira • 0
6
votes
6
replies
1.2k
views
Suggestion for next revision of edgeR User Guide re Design matrix setup
edger error
updated 3.9 years ago by 50k • written 3.9 years ago by • 0
0
votes
14
replies
2.2k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.1 years ago by ★ 3.9k • written 4.1 years ago by • 0
0
votes
0
replies
587
views
Error on FindOptimalBinning function
bhc error
4.1 years ago pavel.granalacant • 0
0
votes
0
replies
843
views
Multicollinearity and pR2Y =0.1
opls-da error multicollinearity
4.2 years ago adriana.roca-fernandez • 0
0
votes
1
reply
994
views
boxplot Error in Bioconductor
boxplot bioconductor R error
4.3 years ago l154359 • 0
0
votes
4
replies
956
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome peaks error Job
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
0
votes
5
replies
1.5k
views
readTranscriptFeatures from genomation
R Rstudio Error readTranscriptFeatures genomation
updated 4.4 years ago by ▴ 20 • written 4.4 years ago by • 0
0
votes
3
replies
797
views
Error in E-Eb Limma package
limma error E-Eb
updated 4.5 years ago by 50k • written 4.5 years ago by • 0
4
votes
7
replies
1.2k
views
bam files to hilbert curve
HilbertCurve error bamfiles GRobject
4.6 years ago adklts • 0
0
votes
6
replies
7.9k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 4.6 years ago by • 0 • written 5.5 years ago by • 0
0
votes
1
reply
1.3k
views
DiffBind dba error
DiffBind dba R error
updated 4.7 years ago by ★ 5.2k • written 4.9 years ago by • 0
0
votes
1
reply
1.2k
views
Help with installation of readat package
readat error
updated 4.7 years ago by 3.8k • written 4.7 years ago by • 0
2
votes
2
replies
1.5k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 4.8 years ago by ▴ 270 • written 4.8 years ago by ▴ 10
0
votes
1
reply
1.7k
views
R: oligo packages install error
oligo packages error
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
0
votes
0
replies
828
views
Error in parseGenBank
genbankr parseGenBank gbk error
4.8 years ago ashley.dederich • 0
2
votes
3
replies
996
views
How can I overcome the error of "No residual degrees of freedom in linear model fits"?
limma microarray error
updated 4.8 years ago by ★ 1.5k • written 4.8 years ago by ▴ 80
0
votes
6
replies
4.1k
views
Error in getOneSeqFromBSgenomeMultipleSequences During singeR tutorial
error
4.8 years ago dfcarril • 0
0
votes
4
replies
1.9k
views
DESeq2 compare all_vs_all levels error
deseq2 error RNAseq
updated 4.8 years ago by ★ 1.3k • written 4.8 years ago by ▴ 30
0
votes
3
replies
956
views
Error in if (all(x <= minReadCount) & lambda <= minReadCount) { : missing value where TRUE/FALSE needed
cnmops cn.mops error
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
6
replies
1.9k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.0 years ago by • 0 • written 5.0 years ago by ▴ 10
0
votes
8
replies
2.5k
views
tximport command error
tx2gene txi error
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
2
votes
6
replies
1.5k
views
EdgeR glmTreat error
edger error
updated 5.0 years ago by 65k • written 5.0 years ago by • 0
1
vote
1
reply
1.0k
views
The query to the BioMart webservice returned an invalid result: biomaRt expected a character string of length 1
biomaRt error
updated 5.0 years ago by 65k • written 5.0 years ago by ▴ 10
0
votes
1
reply
797
views
Error in intramodularConnectivity(ADJ1, colorh1) : object 'colorh1' not found
error wgcna affymetrix data
updated 5.1 years ago by ★ 3.0k • written 5.1 years ago by • 0
2
votes
6
replies
1.9k
views
featurecounts Rsubread ERROR on exon_id
R error software error Rsubread featurecounts
updated 5.1 years ago by ★ 3.6k • written 5.1 years ago by • 0
2
votes
3
replies
3.2k
views
DESeq2- preliminary study no replicates
deseq2 replicates error DESeqDataSetFromMatrix
updated 5.1 years ago by 41k • written 5.1 years ago by • 0
1
vote
1
reply
1.1k
views
Error in getBM(c("affy_rice", "ensembl_gene_id", "entrezgene", "external_gene_name"), : could not find function "featureNames"
annotation error biomaRT affy ricedataset
updated 5.1 years ago by ★ 6.5k • written 5.1 years ago by • 0
1
vote
2
replies
2.0k
views
Errors installing mzR package
proteomics error
updated 5.1 years ago by 1.6k • written 5.1 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks by ATpoint ★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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