Showing : Installation • reset
0
votes
1
reply
739
views
DeSeq2 and GenomicRange installation possible conflict with bioconductor version 3.16?
DESeq2 version3.16 installation bioconductor GenomicRange
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
1
reply
650
views
Regarding Installation of GEOquery
BiocManager installation GEOquery
updated 21 months ago by ▴ 780 • written 21 months ago by • 0
0
votes
3
replies
2.9k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
22 months ago elmfinds • 0
0
votes
1
reply
963
views
Can´t install GenomicRanges and rtracklayer
rtracklayer GenomicRanges Installation
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
2
replies
1.1k
views
cannot install various functions in R
GRanges packages installation
updated 24 months ago by 3.9k • written 24 months ago by • 0
0
votes
3
replies
1.7k
views
More Bioconductor Package Installation Problems
package symlinks directories installation Dropbox
updated 2.1 years ago by 16k • written 2.1 years ago by ▴ 10
1
vote
6
replies
2.2k
views
Bioconductor installation problems
packages installation Bioconductor updating
updated 2.1 years ago by 690 • written 2.1 years ago by ▴ 10
1
vote
1
reply
874
views
list installed packages
Installation
updated 2.2 years ago by 65k • written 2.2 years ago by • 0
1
vote
5
replies
3.1k
views
Problem with DESeq2 installation using in R 1.4.1717
DESeq2 Problem installation with
updated 2.8 years ago by ▴ 730 • written 2.8 years ago by • 0
11
votes
11
replies
15k
views
cannot install edgeR on M1 Mac
apple m1 installation silicon
updated 2.3 years ago by 50k • written 2.8 years ago by ▴ 90
1
vote
1
reply
3.1k
views
Installing hdf5r without admin access
hdf5r installation
updated 2.8 years ago by 16k • written 2.8 years ago by • 0
0
votes
1
reply
2.9k
views
BiocManager.rdb is corrupt
Installation
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
2
votes
2
replies
3.2k
views
Unable to install packages on MacOS
macos installation
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by ▴ 10
2
votes
2
replies
1.8k
views
loading scran package
scran installation
3.2 years ago TJ • 0
2
votes
2
replies
1.1k
views
Feature request: Freezing Bioconductor packages to a specific date
installation time machine mran rspm
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 90
1
vote
3
replies
1.5k
views
unable to install DESeq2 there is no package called XML
deseq2 bioconductor windows xml installation
updated 3.8 years ago by 41k • written 3.8 years ago by • 0
0
votes
1
reply
1.7k
views
ensembldb package installation issue
ensembldb package installation BiocManager
updated 3.8 years ago by ★ 3.9k • written 3.8 years ago by • 0
1
vote
3
replies
4.3k
views
installation failure with BiocManager (URL status was 'Couldn't resolve proxy name')
bioconductor installation proxy BiocManager
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
2
votes
8
replies
2.4k
views
DelayedArray loading Warning causes stop in Bioconductor 3.12
DelayedArray warning installation
updated 3.9 years ago by 16k • written 3.9 years ago by ▴ 10
0
votes
1
reply
866
views
Difficulty Installing Bioconductor
Installation
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
3
replies
4.3k
views
"Permission denied" when installing TCGAbiolinks and RTCGAToolbox
installation permission denied RTCGAToolbox TCGAbiolinks
4.0 years ago julia.tutzauer • 0
3
votes
3
replies
1.3k
views
Incomplete Install of Bioconductor Packages
Installation Packages Missing
updated 3.8 years ago by 1.6k • written 4.0 years ago by ▴ 10
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
0
votes
2
replies
1.1k
views
Problems while installing HTSeqGenie and gmapR
software error HTSeq installation
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
0
votes
2
replies
1.3k
views
Unable to install package
packages installation GenomeGraphs
updated 4.2 years ago by 65k • written 4.2 years ago by • 0
5
votes
5
replies
840
views
Installation: go to specific version of a package prompted
software error installation
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
4
votes
5
replies
1.8k
views
Downgrading R to 3.6.0 version (GOseq problem)
goseq installation
4.3 years ago gdalsky ▴ 40
2
votes
2
replies
954
views
How to write the installation section in the vignette of a package that has not been sent into Bioconductor yet
newpackage vignette installation
updated 4.6 years ago by 3.9k • written 4.6 years ago by ▴ 10
0
votes
3
replies
1.7k
views
Can't install Genesis
Genesis Installation
updated 4.7 years ago by ★ 6.5k • written 4.7 years ago by ▴ 10
1
vote
4
replies
1.6k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by ▴ 70
0
votes
1
reply
991
views
ChemmineOB Installation RHEL
ChemmineOB Linux Installation
5.1 years ago jandrosavich • 0
0
votes
1
reply
989
views
Error when install bioconductor on Mac 10.12 Sierra
installation
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
1
vote
1
reply
1.0k
views
GenomicFeatures won't install for 3.8 release
installation biocmanager
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 90
0
votes
6
replies
7.9k
views
Rhtslib - install error
Rhtslib installation error zlib
updated 4.6 years ago by • 0 • written 5.5 years ago by • 0
0
votes
4
replies
1.5k
views
BiocManager::install() breaks; can't install bioc-devel
biocmanager installation
5.6 years ago Kyle Johnsen ▴ 30
0
votes
2
replies
8.2k
views
Is there a way to specify where BiocInstaller will install packages similar to the "lib=...." for install.packages?
biocinstaller custom library path installation package installation
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 20
0
votes
1
reply
1.1k
views
DelayedArray install fails to UNC path
delayedarray bug installation
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
0
votes
1
reply
1.7k
views
install ChAMP under Ubuntu 18.04 in R 3.4.4 with error "maximal number of DLLs reached..."
ChAMP software error installation
5.9 years ago chxp • 0
0
votes
3
replies
2.1k
views
Dependency installation error due to no longer available CRAN packages ('rngtools', 'pkgmaker')
installation minfi bumphunter
updated 6.0 years ago by ▴ 740 • written 6.0 years ago by • 0
0
votes
2
replies
2.0k
views
reactome.db install problem
installation
6.0 years ago xinfu.xia • 0
2
votes
3
replies
1.2k
views
Cannot install Rhtslib on Mac OS 10.13
rhstlib installation compilation error
6.0 years ago Ryan C. Thompson ★ 7.9k
0
votes
1
reply
1.7k
views
Install package phyloseq
installation phyloseq
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
1
vote
1
reply
3.4k
views
Cannot use Bioconductor with new conda R installation?
bioconductor biocinstaller installation conda
6.2 years ago jol.espinoz ▴ 40
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite package installation installation install
updated 6.2 years ago by ★ 6.5k • written 6.2 years ago by ▴ 10
0
votes
3
replies
2.8k
views
ERROR: compilation failed for package RSQLite
ubuntu installation
updated 6.4 years ago by 25k • written 6.4 years ago by ▴ 70
0
votes
1
reply
2.6k
views
installation of package 'goseq' had non-zero exit status
goseq installation
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
1
reply
1.2k
views
Issues installing "CardinalWorkflows"
installation CardinalWorkflows Imaging mass spectrometry Cardinal
updated 6.4 years ago by ★ 6.8k • written 6.4 years ago by • 0
1
vote
0
replies
1.1k
views
Reinstalling failing - Check packages for root user, too
biocinstaller root installation installation problem
6.5 years ago charles.tilford ▴ 10
0
votes
0
replies
1.3k
views
Problem with ade4 when upgrading to Rstudio 1.1 and OpenR 3.4
phyloseq installation ade4 macos
6.5 years ago sprague • 0
1
vote
1
reply
1.2k
views
Error Installing Gviz
installation
6.6 years ago pederworning • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
United States, just now
France, just now
United States, 10 minutes ago
Ireland, 33 minutes ago
Germany, 54 minutes ago
Traffic: 604 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6