Showing : NEWS • reset
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News: Bioconductor 3.6 release: 3.6 branch created
bioconductor release News
8.3 years ago Valerie Obenchain ★ 6.8k
0
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0
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1.2k
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News: Bioconductor 3.6 release: stop commits to git.bioconductor.org
bioconductor release News
8.3 years ago Valerie Obenchain ★ 6.8k
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0
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1.7k
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News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
8.3 years ago shepherl 4.3k
1
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0
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1.3k
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News: Shields/Badges on Package landing pages
package badges shields News
8.3 years ago shepherl 4.3k
12
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5
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2.7k
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News: DOI for packages
DOI doi packages citation publication News
8.3 years ago shepherl 4.3k
0
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0
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1.2k
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News: Bioconductor 3.6 release: new package deadline
package submission bioconductor release News
8.3 years ago shepherl 4.3k
0
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0
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1.4k
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News: Final List of Deprecated Packages for Bioc3.6
bioconductor release deprecate News
8.4 years ago shepherl 4.3k
0
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0
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1.1k
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News: Deadline for Packages and Data Bioc3.6
release package submission News
8.4 years ago shepherl 4.3k
0
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1
reply
1.7k
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News: List of Deprecated Packages for Bioc3.6
deprecate News
8.4 years ago shepherl 4.3k
0
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0
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1.2k
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News: Workflows now building on Bioc3.6
workflows News
8.4 years ago shepherl 4.3k
0
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0
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1.1k
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News: Bioconductor 3.6 release
bioconductor news release News
8.4 years ago Valerie Obenchain ★ 6.8k
14
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8
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3.6k
views
News: Bioconductor packages now each have a DOI.
doi citation News
updated 8.4 years ago by 25k • written 8.5 years ago by 21k
3
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0
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2.0k
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News: BioCAsia, 17th November 2017, Adelaide, Australia
conference news News
8.4 years ago Matthew Ritchie ▴ 1000
1
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1.6k
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News: ensembl 90 ensembldb EnsDb databases have been added to AnnotationHub
ensemblb ensembl AnnotationHub annotation News
8.4 years ago Johannes Rainer ★ 2.1k
1
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0
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1.1k
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News: ensembl 90 gtfs and fasta twobits have been added to AnnotationHub
annotationhub bioconductor News
updated 8.4 years ago by 25k • written 8.4 years ago by 4.3k
1
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1
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1.6k
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News: Ensembl 90 has been released
ensembl biomart ensembl90 release News
8.5 years ago Thomas Maurel ▴ 800
10
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3
replies
3.9k
views
News: Updates to BiocStyle formatting
BiocStyle vignettes rmarkdown latex News
8.5 years ago Andrzej Oleś ▴ 750
6
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0
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2.8k
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News: Bioconductor git server is now LIVE!
git github svn git-svn bridge git mirror News
8.5 years ago nitesh.turaga ▴ 140
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1
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1.6k
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News: Interested in developing a new gene set enrichment tool ?
gene ontology go analysis gene set enrichment gene set analysis News
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
1
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News: Git transition is on August 16th.
git svn News
8.5 years ago nitesh.turaga ▴ 140
0
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0
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1.7k
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News: Initial List of Deprecated Packages for Bioc3.6
deprecate EWCE MAIT stepwiseCM onechannelgui News
8.5 years ago shepherl 4.3k
10
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15
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3.8k
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News: BioC 2017: Where Software and Biology Connect, 26 / 27 - 28 July, Boston, MA
conference bioc2017 News
8.9 years ago • updated 8.6 years ago Martin Morgan 25k
4
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1
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3.1k
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News: Bioconductor git transition BETA phase starts now.
git svn infrastructure bioconductor News
8.6 years ago nitesh.turaga ▴ 140
1
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0
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1.5k
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News: complete set of OrgDb packages have been added to AnnotationHub
bioconductor annotationhub orgdb News
8.7 years ago shepherl 4.3k
2
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0
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1.1k
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News: ensembl 89 gtfs and fasta twobits have been added to AnnotationHub
bioconductor annotationhub ensembl89 News
8.7 years ago shepherl 4.3k
1
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0
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1.6k
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News: Ensembl 89 has been released
ensembl biomart ensemblbiomart ensembl89 News
8.7 years ago Thomas Maurel ▴ 800
0
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0
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2.0k
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News: Pathview Web server published in NAR
pathway analysis visualization data integration omics pathview News
8.7 years ago Luo Weijun ★ 1.6k
0
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News: ensembl 87 and 88 gtfs and fasta twobits have been added to AnnotationHub
bioconductor annotationhub News
8.8 years ago shepherl 4.3k
2
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0
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1.4k
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News: Bioconductor Dockers Updated
bioconductor docker News
8.8 years ago shepherl 4.3k
0
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0
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868
views
News: Single Package Builder Upgrade
bioconductor News
8.8 years ago shepherl 4.3k
8
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1
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3.4k
views
News: Bioconductor 3.5 is released
bioconductor news release News
updated 8.8 years ago by 16k • written 8.8 years ago by ★ 6.8k
5
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5
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2.9k
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News: Ensembl 88 is out!
ensembl ensembl mart biomart e!88 News
8.9 years ago Thomas Maurel ▴ 800
4
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1
reply
2.3k
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News: Advanced R programming course - EMBL Heidelberg, 3-4 April 2017
course workshop News
9.0 years ago • updated 8.9 years ago Laurent Gatto 1.6k
0
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News: Annotation packages maintained by Francesco Ferrari
NEWS News
8.9 years ago Valerie Obenchain ★ 6.8k
3
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0
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1.5k
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News: Bioconductor 3.5 release
Bioconductor release news News
8.9 years ago Valerie Obenchain ★ 6.8k
1
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0
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1.1k
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News: New Package Submission Deadline March 31
bioconductor issue tracker News
8.9 years ago shepherl 4.3k
3
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0
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1.7k
views
News: Updates to Bioconductor Dockers
docker bioconductor News
9.0 years ago shepherl 4.3k
0
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0
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1.7k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
proteomics mass spectrometry biostatistics News
9.0 years ago Laurent Gatto 1.6k
0
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1
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2.1k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
9.3 years ago • updated 9.1 years ago Yuan Tian ▴ 90
2
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0
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2.1k
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News: Ascona Workshop 2017 - Statistical Challenges in Single-Cell Biology: Deadline on 20 January
conference single cell statistical modeling News
9.3 years ago • updated 9.1 years ago Wolfgang Huber ★ 13k
0
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1.7k
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News: Exploiting computational immunology to understand the immune system| Symposium
computational biology immunology bioinformatics symposium RIMLS News
updated 9.1 years ago by • 0 • written 9.1 years ago by • 0
0
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0
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1.4k
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News: Ensembl 87 is out!
ensembl ensemble mart ensembl mart biomart News
9.2 years ago amonida ▴ 20
6
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0
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2.3k
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News: Bioconductor 3.4 is released
news announcement release News
9.3 years ago Hervé Pagès 16k
0
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1
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998
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News: Bioc 'devel' repository temporarily not available
biocLIte News
9.3 years ago Martin Morgan 25k
1
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1
reply
1.6k
views
News: Ensembl release 86 is out!
ensembl biomart ensembl release ensembl mart News
9.3 years ago Thomas Maurel ▴ 800
0
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0
replies
1.9k
views
News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
9.3 years ago Yuan Tian ▴ 90
3
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1
reply
1.5k
views
News: Bioconductor Mendeley Group
bioconductor publication News
updated 9.4 years ago by • 0 • written 9.4 years ago by 21k
2
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1.5k
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News: ggtree published in MEE
ggtree News
9.4 years ago Guangchuang Yu ★ 1.2k
0
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1
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2.7k
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News: Bug in ChAMP package champ.SVD() function
champ methylation 450k SVD EPIC News
9.4 years ago Yuan Tian ▴ 90
0
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0
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2.3k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
9.4 years ago Wolfgang Huber ★ 13k
345 results • Page 5 of 7
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Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
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