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biocLite
•
reset
2
votes
6
replies
36k
views
Installing Bioclite.R Package
Bioclite
install
8.4 years ago
louiseapps2
• 0
3
votes
2
replies
16k
views
biocLite R Version
biocLite
updated 3.5 years ago by
Marcel Ramos
690 • written 3.5 years ago by
jmagomez
• 0
6
votes
3
replies
12k
views
Why package "BiocLite" is not available (for R version 3.6.1)
biocLite
updated 4.5 years ago by
shepherl
3.8k • written 4.5 years ago by
3076782769
• 0
9
votes
6
replies
9.4k
views
What's the deal with biocLite's "Update all/some/none? [a/s/n]"?
bioclite
7.8 years ago
kjo
▴ 70
2
votes
2
replies
8.1k
views
biocLite() fails to update packages when main library not writable
bioclite
package updates
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
Jenny Drnevich
★ 2.0k
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error
BioGenerics
bioclite
6.5 years ago
p.janitza
▴ 50
4
votes
4
replies
7.6k
views
Problems install R XML package on CentOS 7
r packages
centos7
bioclite
libxml2
updated 6.6 years ago by
Pariksheet Nanda
▴ 120 • written 6.6 years ago by
kai.karius
▴ 10
8
votes
4
replies
6.9k
views
Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
0
votes
2
replies
6.1k
views
Unable to install any bioconductor packages
R
biocinstaller
bioclite
package installation
6.7 years ago
sebastien200109
• 0
0
votes
4
replies
6.1k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller
bioclite
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
Stephanie M. Gogarten
▴ 870
2
votes
10
replies
6.0k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor
biocLite
R packages
oldversion
8.4 years ago
svlachavas
▴ 830
5
votes
4
replies
5.5k
views
Problem using BiocUpgrade
update
bioclite
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
dianmante
• 0
0
votes
4
replies
4.7k
views
Problems with RSQLite compilation
rsqlite
bioconductor
bioclite
rcpp.h
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
conkline
• 0
2
votes
1
reply
4.6k
views
Upgrade to Bioconductor 3.4 - problems with R
r update
upgrade
bioclite
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
Lna
• 0
2
votes
2
replies
4.5k
views
Help with installing biocLite.R
biocLite
biocinstaller
9.0 years ago
thomas.mohr
▴ 20
0
votes
5
replies
4.2k
views
FactoMineR failed after installing Bioconductor
software error
factomineR
bioclite
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
dany_wm44
• 0
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db
bioclite
9.0 years ago
Steve Pederson
▴ 170
1
vote
1
reply
3.6k
views
status was 'Couldn't connect to server': bioClite
bioclite
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
GENOMIC_region
• 0
1
vote
2
replies
3.5k
views
dyld: Library not loaded: @rpath/libc++abi.1.dylib
DESeq2
biocLite
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
jordan.berg
• 0
0
votes
9
replies
3.5k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte
tximportData
updated 6.3 years ago by
hauken_heyken
▴ 80 • written 7.8 years ago by
jarod_v6@libero.it
▴ 40
1
vote
2
replies
3.4k
views
BiocLite installation issues
BiocLite
updated 3.6 years ago by
Kevin Blighe
★ 3.9k • written 3.6 years ago by
patricia_slattery
▴ 10
0
votes
4
replies
3.1k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
amyfm
▴ 10
0
votes
2
replies
2.8k
views
Problem using biocLite() to update packages
biocLite
BiocInstaller
variantannotation
updated 6.5 years ago by
James W. MacDonald
65k • written 6.5 years ago by
Jenny Drnevich
★ 2.0k
5
votes
11
replies
2.8k
views
Error while installing Phyloseq using biocLite
bioclite
phyloseq
install error
5.5 years ago
khp
▴ 30
0
votes
4
replies
2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite
openCyto
package installation
updated 6.2 years ago by
Jiang, Mike
★ 1.3k • written 6.6 years ago by
Robert Baer
▴ 70
0
votes
5
replies
2.6k
views
reactome.db installation problem
reactome.db
bioclite
7.0 years ago
Jan-Jaap
• 0
0
votes
6
replies
2.6k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite
gcc
install
fedora
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
Knut Hansen
▴ 20
0
votes
1
reply
2.4k
views
Bioconductor installation problem
installation
biocLite
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
liangc.mu
▴ 10
5
votes
5
replies
2.2k
views
Is BiocInstaller::biocLite incompatible with withr::with_makevars?
biocLite
package installation
withr
biocinstaller
rhtslib
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
merv
▴ 120
0
votes
4
replies
2.1k
views
Bioconductor - not updating
bioconductor
R
bioclite
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
gdembins
• 0
0
votes
4
replies
2.0k
views
update packages when installing a new package
bioclite
package updates
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
carol white
▴ 680
1
vote
3
replies
2.0k
views
update all/some/none how to set default to "update all"
biocLite
update
all
default
ask
updated 5.2 years ago by
Fischer-philipp
▴ 30 • written 5.2 years ago by
rgiannico
▴ 10
0
votes
5
replies
2.0k
views
openCyto fails to load
opencyto
bioclite
updated 8.5 years ago by
yang.chen
• 0 • written 8.5 years ago by
pavitrarc
▴ 20
0
votes
1
reply
1.9k
views
Warning messages with biocLite()
bioclite
9.4 years ago
Robert Baer
▴ 70
0
votes
2
replies
1.9k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
6.1 years ago
cpat
• 0
1
vote
4
replies
1.8k
views
Problem installing Bioconductor
biocLite
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
rj.innet
• 0
1
vote
2
replies
1.8k
views
Trouble Installing Bioconductor Basic Packages
R
bioclite
installation problem
linuxmint
virtualbox
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
tasnif.rahman
• 0
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
0
votes
1
reply
1.8k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation
custom library path
biocLite
bioconductor
8.6 years ago
svlachavas
▴ 830
0
votes
2
replies
1.7k
views
How to permanently add custom repositories to BiocLite
bioclite
repository
repos
6.6 years ago
arnau.bria
• 0
6
votes
2
replies
1.7k
views
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
bioclite
package installation
installation
install
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
cristian
▴ 10
3
votes
5
replies
1.7k
views
GO.db installation fails (MacOS, AnnotationDbi, R3.5.0)
GO
bioclite
R3.5
mac os x
annotationdbi
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Jens Preussner
▴ 30
0
votes
3
replies
1.7k
views
unable to install GenomeWideSNP_6 cdf
makecdfenv
bioclite
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
vinaysbharadhwaj
• 0
1
vote
1
reply
1.6k
views
Problem with installing "biocLite" and "Monocle" with R 4.2.0
biocLite
updated 23 months ago by
Mike Smith
★ 6.5k • written 23 months ago by
a_d_ho
• 0
1
vote
2
replies
1.5k
views
how to load edgeR each time I start R?
edger
bioclite
installation
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
lplough
• 0
1
vote
2
replies
1.5k
views
error in sourcing biocLite: Error in get(".BioC_version_associated_with_R_version", envir = asNamespace("tools")
bioclite
9.0 years ago
melanie.shook
• 0
1
vote
3
replies
1.5k
views
Error biocLite() newest version of ChAMP
R
bioclite
champ
6.0 years ago
rosa_hegi
▴ 10
0
votes
4
replies
1.5k
views
biocLITE annotation Rstudio
annotation
bioclite
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
jemaatita
• 0
2
votes
5
replies
1.5k
views
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioconductor
bioclite
updated 6.5 years ago by
shepherl
3.8k • written 6.5 years ago by
barb.bryant
▴ 10
0
votes
3
replies
1.5k
views
biocLite on R 3.2.0 stalls then vanishes
software error
bioclite
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
Will Landau
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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