Bioconductor Forum

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limma lmfit voom limma design matrix voomwithqualityweights

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by kediggins ▴ 10

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bioconductor

7.1 years ago junyi • 0

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7

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deseq2 diffbind csaw greylistchip chipseq

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by Yonatan Amzaleg • 0

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3

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signer install error

updated 7.1 years ago by shepherl 4.3k • written 7.1 years ago by taha.valizadeh • 0

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3

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deseq2

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by coyoung ▴ 10

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deseq2

7.1 years ago evocanres • 0

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shortread readaligned

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by kspata ▴ 10

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GDCdow tcgabiolinks error tcgadownload download_error

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.1 years ago by miki716 • 0

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3

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biotmle

updated 7.1 years ago by nhejazi • 0 • written 7.1 years ago by detroit.drive • 0

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deseq2 bioconductor bioinformatics statistics

updated 2.9 years ago by Michael Love 43k • written 7.1 years ago by casikecola • 0

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deseq2 batch effect across species

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by mjldehoon • 0

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clusterprofiler

7.1 years ago unamourdeswann ▴ 10

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SC3 plot consensus marker heatmap

updated 7.1 years ago by Vladimir Kiselev ▴ 150 • written 7.2 years ago by shaktirielland • 0

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scater seurat singlecellexperiment rnaseq

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by hamza_karakurt ▴ 60

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R GenomicRanges IRanges

7.1 years ago foehn ▴ 100

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11

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bioconductor news release News

updated 7.1 years ago by restat110 • 0 • written 7.3 years ago by Valerie Obenchain ★ 6.8k

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deseq2 prepDE

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by shintzen • 0

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edger deseq2

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by cottrellka • 0

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dexseq

7.1 years ago Lance Parsons • 0

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4

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deseq2 error namespace biobase

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by jpcourneya • 0

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champ

7.1 years ago sinha.puja ▴ 10

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wgcna weighted correlation network analysis correlation matrix scale-free topology metagenomics

updated 7.1 years ago by Peter Langfelder ★ 3.0k • written 7.1 years ago by eneas_aguirre • 0

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limma sva paired sample

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by flippy23 • 0

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deseq2

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by lara • 0

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ALDEx2 ALDEx microbiome 16s

7.1 years ago mstagliamonte ▴ 10

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dropletutils

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by jmanning • 0

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ReactomePA

updated 7.1 years ago by Guangchuang Yu ★ 1.2k • written 7.2 years ago by dorothy.jrobbert ▴ 30

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limma

updated 7.1 years ago by Gordon Smyth 53k • written 21.9 years ago by Susan Renn ▴ 20

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DESeq2

7.1 years ago capricygcapricyg ▴ 10

1

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deepSNV

updated 7.1 years ago by story.benjamin ▴ 20 • written 7.1 years ago by thestaroceanster • 0

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5

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differential gene expression nanostring confounding factors

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by Guillaume Robert • 0

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edger

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by samoura48 • 0

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2

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limma rsubread

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by justinkablan225 ▴ 10

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metagenomeseq error metagenomeseq microbiome

7.1 years ago slizo001 • 0

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champ

7.1 years ago sinha.puja ▴ 10

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biostatistics bioinformatics data science Job

7.1 years ago l.tomalin1987 • 0

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methylation microarray illumina minfi methyanalysis

updated 7.1 years ago by Ou, Jianhong ★ 1.3k • written 7.1 years ago by Adam_M • 0

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flowworkspace

updated 7.1 years ago by Jiang, Mike ★ 1.3k • written 7.1 years ago by vonskopnik ▴ 10

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1000

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software error

7.1 years ago sinha.puja ▴ 10

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5

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timecourse deseq2 multiple factor design LRT

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by juditkovacsbio • 0

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6

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BSgenome.Mmusculus tandem repeats TRF

updated 7.1 years ago by shepherl 4.3k • written 7.2 years ago by fusion.slope ▴ 10

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5

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deseq2 normalization

7.2 years ago • updated 7.1 years ago Maryam • 0

6

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rnaseq limma

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by rsrzkk • 0

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diffhic gothic hicup hic-c hic

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by mictadlo ▴ 10

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3

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scater scran singlecellexperiment

updated 7.1 years ago by Aaron Lun ★ 29k • written 7.1 years ago by Abhishek Singh ▴ 20

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hic diffhic gothic hicup hic-c

7.2 years ago • updated 7.1 years ago mictadlo ▴ 10

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S4Vectors R-3.5.1

7.1 years ago zhang303 • 0

2

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2

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geoquery

updated 7.1 years ago by James W. MacDonald 68k • written 7.1 years ago by yurigorelik ▴ 10

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3

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GenomicAlignments Biostrings

updated 7.1 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by Robert Castelo ★ 3.4k

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RNA-seq deseq2 normalization readcount reverse

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by knholm • 0