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0
votes
2
replies
1.6k
views
Biostrings install error
biostrings
install error
7.2 years ago
owenchapman1
• 0
3
votes
8
replies
2.5k
views
FourCSeq - how to write tables with the results
fourcseq
updated 7.2 years ago by
ferbecneu
• 0 • written 10.3 years ago by
francesc.lopez
• 0
0
votes
2
replies
1.2k
views
Deseq2 paired analysis
deseq2
paired samples
interaction terms
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
sally.badawi
• 0
0
votes
1
reply
1.9k
views
mzR Error (different Version)
mzr
metab
updated 7.2 years ago by
Laurent Gatto
1.6k • written 7.2 years ago by
martagarciapalacin
• 0
0
votes
1
reply
703
views
DESeq2 with 3 treatment +3 genotype
deseq2
7.2 years ago
hussienfotoh
• 0
0
votes
2
replies
1.3k
views
Memory usage and SWATH2stats
swath
dia
msstats
swath2stats
updated 7.2 years ago by
Peter
• 0 • written 7.2 years ago by
jess.burns
• 0
0
votes
7
replies
1.2k
views
Differential Expression - DESeq2 identifies to many differentially expressed genes (~20,000)
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
coyoung
▴ 10
6
votes
7
replies
3.4k
views
bplapply with progressbar
bplapply
progressbar
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
wt215
• 0
0
votes
0
replies
1.1k
views
draw.pairwise.venn: Misplaced line connecting external area label
venndiagram
7.2 years ago
salamandra
▴ 20
1
vote
6
replies
3.2k
views
Recommended way to use BiocInstaller / BiocManager in packages on CRAN?
cran
biocinstaller
biocmanager
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
Kevin Ushey
▴ 130
2
votes
1
reply
863
views
How tximport summerize transcript-level abundance to gene-level
tximport
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
lkianmehr
• 0
0
votes
1
reply
1.4k
views
MaxQuant to MSstat question
msstats
7.2 years ago
yasaman.jami
• 0
1
vote
6
replies
1.1k
views
[DESeq2] Pre-filtering counts got different results after running results
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
tenger929
• 0
0
votes
7
replies
4.2k
views
nmf function not working
somaticsignatures
NMF
updated 7.2 years ago by
Xin
• 0 • written 7.5 years ago by
aslam.mohammed398
• 0
0
votes
2
replies
1.3k
views
[Deseq2] Estimating size factors using samples which have been excluded for QC
deseq2
estimatesizefactors
updated 7.2 years ago by
Ryan C. Thompson
★ 7.9k • written 7.2 years ago by
owenchapman1
• 0
0
votes
4
replies
2.0k
views
Biostrings - translate gives wrong results for triplets TTG and CTG
biostrings
updated 7.2 years ago by
Hervé Pagès
16k • written 7.5 years ago by
janas.sebastien
• 0
0
votes
2
replies
2.2k
views
GSEA using TFs as the gene set
GSEA
transcription factor binding site enrichment analysis
updated 7.2 years ago by
lhuang7
▴ 50 • written 7.2 years ago by
thkapell
▴ 10
1
vote
2
replies
2.0k
views
lumi package fails to load because of a missing dependency (bumphunter)
lumi
methylumi
updated 7.2 years ago by
lhuang7
▴ 50 • written 7.2 years ago by
kaur.alasoo
▴ 30
8
votes
4
replies
1.7k
views
maintainer option for bioconductor packages
bioconductor
R
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
FDG
▴ 70
0
votes
5
replies
1.4k
views
DESeq2 for a 3-way interaction analysis?
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
idapantoja
• 0
1
vote
2
replies
3.0k
views
I can't install the pasilla package
pasilla
biocmanager
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
Aurora
▴ 20
0
votes
1
reply
824
views
DESeq2 Batch effects
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
sancharisircar24
• 0
0
votes
3
replies
1.4k
views
DeSeq2 extract internal expression values
deseq2
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
konradgru
• 0
1
vote
5
replies
3.8k
views
problems regarding installing TEQC package
TEQC
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
xiang.zuo
• 0
4
votes
2
replies
1.2k
views
EdgeR applied to peptide screen: help!
edger
calcnormfactors
peptide screen
library size factor
updated 7.2 years ago by
Gordon Smyth
53k • written 7.2 years ago by
oakhamwolf
• 0
2
votes
3
replies
3.0k
views
Using LIMMA for differential gene analysis of microarray data
limma
differential gene expression
ncbi geo
affymetrix microarrays
updated 7.2 years ago by
Aaron Lun
★ 29k • written 7.2 years ago by
Francesca McGrath
• 0
0
votes
1
reply
1.1k
views
biomaRt error message
biomart
bioconductor
rice
7.2 years ago
Didi
▴ 10
4
votes
2
replies
2.3k
views
Seurat to SingleCellExperiment Converting error in MAC
singlecellexperiment
single-cell
rnaseq
updated 7.2 years ago by
Steve Lianoglou
★ 13k • written 7.2 years ago by
hamza_karakurt
▴ 60
0
votes
2
replies
1.7k
views
Adding information to the Installation document (https://www.bioconductor.org/install/)
Website
Documentation
7.2 years ago
Nicolas Delhomme
▴ 320
0
votes
1
reply
1.3k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
7.2 years ago
Zhong JW
• 0
3
votes
1
reply
1.0k
views
dba.count binding matrix coordinates
DiffBind
updated 7.2 years ago by
Rory Stark
★ 5.2k • written 7.2 years ago by
jingyaq
▴ 10
0
votes
1
reply
2.6k
views
Can not install packages
ballgown
genefilter
RskittleBrewer
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
Mithil Gaikwad
• 0
0
votes
1
reply
2.2k
views
edgeR 2-way ANOVA testing
edger
ANOVA
updated 7.2 years ago by
Gordon Smyth
53k • written 7.2 years ago by
martyna.broda
• 0
0
votes
7
replies
2.5k
views
DESeq2 with several biological replicates
rnaseq
deseq2
differential gene expression
7.2 years ago
bharata1803
▴ 60
2
votes
1
reply
1.6k
views
Rsubread for microbiome data analysis: genome >4GB
alignment
rsubread
microbiome
updated 7.2 years ago by
Wei Shi
★ 3.6k • written 7.2 years ago by
W. Evan Johnson
▴ 870
1
vote
2
replies
2.0k
views
makeTxDbFromUCSC: error in Make the TxDb object
GenomicFeatures
makeTxDbFromUCSC
R
7.2 years ago
DMA1
▴ 10
0
votes
8
replies
3.1k
views
normalized counts from RUVg run: is further library size normalization needed?
RUVSeq
updated 7.2 years ago by
davide risso
▴ 980 • written 7.2 years ago by
capricygcapricyg
▴ 10
0
votes
0
replies
934
views
Filtering probesets for HuEx ST1.0 after probeset normalization
microarray
exons
probefiltering
7.2 years ago
GENOMIC_region
• 0
0
votes
1
reply
4.8k
views
coverting mstrg gene_id to gene symbols
bioconductor
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
harris
• 0
3
votes
0
replies
2.1k
views
Job:
Software ecosystem architect position, Dana Farber Cancer Institute
software engineering
bioconductor
cloud computing
Job
7.2 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
1.7k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
7.2 years ago
anni.djurhuus
• 0
0
votes
3
replies
1.4k
views
TMM normalization of cancer RNA seq
cancer
normalization
updated 7.2 years ago by
Steve Lianoglou
★ 13k • written 7.2 years ago by
marak
• 0
4
votes
10
replies
4.1k
views
Question: GoSeq: opposite pwf plot for up- and downregulated genes
goseq
10.2 years ago • updated 7.2 years ago
Jakub
▴ 50
2
votes
2
replies
1.4k
views
Map exon level probeset to gene level probeset - Huex ST1.0
pd.huex.1.0.st.v2
exon array analysis
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
GENOMIC_region
• 0
3
votes
2
replies
1.1k
views
Problem with apostrophe in biomaRt query
biomaRt
updated 7.2 years ago by
Mike Smith
★ 6.6k • written 7.2 years ago by
analeonpalacio
▴ 10
0
votes
3
replies
1.3k
views
normalization of ChIP-seq data
normalization
chip-seq
7.2 years ago
Bogdan
▴ 670
0
votes
4
replies
968
views
Modify Biostrings script
Biostrings modify translate
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
gingergeiger22
• 0
6
votes
4
replies
6.6k
views
Method to get normalized counts in edgeR without cpm
edger
normalization
updated 7.2 years ago by
Gordon Smyth
53k • written 7.2 years ago by
Pauline
▴ 20
0
votes
2
replies
2.2k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera
limma
gene set analysis
gene set enrichment
updated 7.2 years ago by
Gordon Smyth
53k • written 7.2 years ago by
emeline.perthame
• 0
1
vote
3
replies
1.3k
views
Selecting probe data from Clariom D assays using the fid probe tags
clariom
pd.clariom.d.human
updated 7.2 years ago by
James W. MacDonald
68k • written 7.2 years ago by
AliStair Rust
• 0
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