6
votes
12
replies
20k
views
Problem making DESeq dataset; Error all variables in design formula must be columns in colData
deseq2 deseq counts rnaseq differential gene expression
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 10
1
vote
0
replies
2.3k
views
HTqPCR readCtData 12 samples x 63 genes - error: row names supplied are of the wrong length
HTqPCR readCtData Heidi Dvinge
9.7 years ago virginia.claudio ▴ 10
0
votes
1
reply
1.3k
views
Installation error GeneRFold and GeneR.
GeneRFold GeneR
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 50
1
vote
3
replies
2.1k
views
DEXSeq warnings for millions of reads
DEXSeq warnings dexseq_count
updated 9.7 years ago by ▴ 130 • written 9.7 years ago by ★ 1.5k
2
votes
5
replies
1.9k
views
Sample code doesn't seem to be working on fresh install of regioneR
regioner
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 140
1
vote
1
reply
1.8k
views
How to get diff expresion results from sam files
differential gene expression sam
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
2
votes
3
replies
3.9k
views
scran: question on minimum cluster size for computeSumFactors()
scran single cell normalization clustering
9.7 years ago aatsmith • 0
4
votes
2
replies
1.5k
views
Get internal exons using GenomicFeatures
genomicfeatures granges
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 10
4
votes
9
replies
5.8k
views
Is it possible to read bigwig files with rtracklayer over https? Comes down to GenomeInfoDb::seqinfo()
rtracklayer genomeinfodb
9.7 years ago Leonardo Collado Torres ★ 1.1k
0
votes
8
replies
2.5k
views
Regarding somatic signature package
somaticsignatures
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 10
5
votes
8
replies
3.3k
views
closest-features equivalent in Bioconductor for finding closest gene(s)
genomicranges granges iranges annotatepeak
updated 9.7 years ago by ★ 11k • written 9.7 years ago by ▴ 80
1
vote
2
replies
9.0k
views
Error in dyn.load(file, DLLpath = DLLpath, ...) :
R qvalue
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
1
vote
3
replies
1.7k
views
GeneR installation error
GeneR
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 50
0
votes
3
replies
1.5k
views
replace, merge and delete entries in GRangeList
grangeslist
updated 9.7 years ago by ★ 11k • written 9.7 years ago by • 0
1
vote
1
reply
1.5k
views
OpenCyto -- time gate and border events
opencyto gating flowcore flow cytometry
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 30
4
votes
2
replies
2.0k
views
Voom: estimation of mean-variance relationship with gene expression data normalized with methods other than cpm
limma voom
updated 9.7 years ago by 53k • written 9.7 years ago by • 0
3
votes
1
reply
1.8k
views
AnnotationHub: confusing pValue/qValue for (some) Roadmap records
roadmap project annotationhub epigenomics big data
updated 9.7 years ago by ★ 6.8k • written 9.7 years ago by ▴ 350
4
votes
1
reply
3.6k
views
csaw - workflow to incorporate input/control samples?
csaw chipseq differential binding analysis
updated 9.7 years ago by ★ 29k • written 9.7 years ago by ▴ 10
0
votes
0
replies
1.0k
views
illumina HM 450 data
illumina450k methylation
9.7 years ago niutster • 0
3
votes
4
replies
2.3k
views
DESeq2::rlog - does it make sense to use it when I don't have duplicates?
deseq2
9.7 years ago Chao-Jen Wong ▴ 40
0
votes
2
replies
3.0k
views
OpenCyto -- proper gating of CD45
opencyto gating flowworkspace
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by ▴ 30
2
votes
6
replies
2.2k
views
effect of polyploidy level on RUVs normalisation
normalization ruvseq ruvnormalize ruvs eda
9.7 years ago thomas.wolfe • 0
2
votes
8
replies
2.5k
views
edgeR - inconsistent logFC sign
edgeR
9.7 years ago sharvari gujja ▴ 40
1
vote
5
replies
2.9k
views
Gviz AlignmentTrack problem
Gviz
updated 9.7 years ago by ▴ 750 • written 9.7 years ago by • 0
0
votes
4
replies
2.0k
views
problem of GOSemSim R package operation geneSim()
gosemsim
9.7 years ago bnembarekmarwa • 0
1
vote
3
replies
2.1k
views
OpenCyto - getting gate coordinates
opencyto
9.7 years ago Ulrik Stervbo ▴ 30
0
votes
1
reply
1.9k
views
DESeq2 followed by Reporting tools lists blank ensemble gene ID's and symbols but has image, logFC and p-value intact in HTML file
deseq2 rnaseq reportingtools
updated 9.7 years ago by 43k • written 9.7 years ago by • 0
2
votes
5
replies
1.2k
views
a complicate scenario for Design Matrix
edgeR design matrix
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
3
votes
3
replies
2.4k
views
read counts of paired end reads for DESeq2 analysis
deseq featurecounts paired
updated 9.7 years ago by ★ 13k • written 9.7 years ago by • 0
4
votes
3
replies
3.5k
views
Modifying eset@assayData$exprs : Error : cannot change value of locked binding for 'exprs'
GEOquery
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ▴ 40
0
votes
1
reply
1.7k
views
ChipQCSample error Error in `colnames<-`(`*tmp*`, value = c("A", "B", "C")) : length of 'dimnames' [2] not equal to array extent
chipseq chipqc
updated 9.7 years ago by ▴ 420 • written 9.7 years ago by • 0
0
votes
0
replies
1.5k
views
Rjava proxy configuration ?
rJAVA java proxy connectiontimeout rdavidwebservice
9.7 years ago Julien FOURET • 0
0
votes
5
replies
2.3k
views
makeTxDbFromGFF returns empty object
genomicfeatures txdb maketxdbfromgff
9.7 years ago TimothéeFlutre ▴ 80
0
votes
6
replies
3.5k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
9.7 years ago dfrtyu • 0
0
votes
3
replies
1.7k
views
Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 40
0
votes
0
replies
1.9k
views
Job: Senior Postdoctoral Fellow in Computational Biology/Bioinformatics : Adelaide, Australia
postdoc bioinformatics network analysis australia systemsbiology Job
9.7 years ago david.lynn • 0
0
votes
3
replies
1.4k
views
VariantAnnotation dbSNPs strand
variantannotation
9.7 years ago ribioinfo ▴ 100
1
vote
1
reply
724
views
getBM method uses read.table with quote defaulted to "\""
biomaRt
updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 10
0
votes
0
replies
1.5k
views
SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
9.7 years ago John Townsend ▴ 20
0
votes
6
replies
2.1k
views
Inferring qualitative gene regulatory interactions from microarray data
gene regulated regulatory network gene interaction
updated 9.7 years ago by ★ 3.4k • written 9.9 years ago by • 0
1
vote
0
replies
1.9k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea ncrna coexpression gene set analysis gene set testing
9.7 years ago m.fletcher ▴ 20
0
votes
1
reply
1.6k
views
Error with FunciSNP
snp R gwastools
9.7 years ago musomilan • 0
0
votes
3
replies
5.9k
views
Installation Problems
updated 9.7 years ago by • 0 • written 12.6 years ago by ★ 13k
0
votes
12
replies
4.0k
views
Error in strsplit() : non-character argument - using DEXSeq
dexseq_count DEXSeqDataSetFromHTSeq DEXSeq strsplit
updated 9.7 years ago by ▴ 20 • written 9.7 years ago by ▴ 10
2
votes
1
reply
2.0k
views
Filtering array data with nsFilter
genefilter nsFilter
updated 9.7 years ago by 53k • written 9.7 years ago by • 0
4
votes
1
reply
1.4k
views
News: About the recent flurry of spam posts
security spam News
9.7 years ago Dan Tenenbaum ★ 8.2k
5
votes
9
replies
6.6k
views
Trouble with Tximport
tximport salmon
updated 9.7 years ago by 43k • written 9.7 years ago by ▴ 30
0
votes
2
replies
1.5k
views
how to get transcript annotation (unique)
txdb
9.7 years ago KB ▴ 50
1
vote
6
replies
3.8k
views
Errors in creating a flowSet from fcs files
flowcore flowstats flow cytometry read.flowset()
updated 9.7 years ago by ★ 1.3k • written 9.7 years ago by • 0
0
votes
1
reply
2.4k
views
Is forbidden by the server
svn
updated 9.7 years ago by ★ 8.2k • written 9.7 years ago by • 0
46,706 results • Page 398 of 935
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